Camelia, the Perl 6 bug

IRC log for #bioclipse, 2009-07-29

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All times shown according to UTC.

Time Nick Message
06:55 sneumann joined #bioclipse
07:14 olass joined #bioclipse
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08:10 shk3 joined #bioclipse
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09:21 CIA-63 bioclipse: shk3 * r11705 /bioclipse2/trunk/plugins/n​et.bioclipse.spectrum/src/ (2 files in 2 dirs): added a check for a file being a spectrum or not
09:45 CIA-63 bioclipse: shk3 * r11706 /bioclipse2/trunk/plugins/net.biocli​pse.spectrum/src/net/bioclipse/spect​rum/views/SpectrumCompareView.java: this is to have same y range and a label to ensure uniform width of graphics
09:48 jprieur joined #bioclipse
09:50 jprieur Hi there, does anybody knows where I could find the source code for the xws4j library, which is used in bioclipse?
10:04 jprieur ok, it seems that there's no source code bundle but I can get it from SVN at http://sourceforge.net/projects/xws4j/develop
10:04 zarah jprieur's link is also http://tinyurl.com/l6u3yo
10:07 egonw joined #bioclipse
10:11 egonw moin
10:11 zarah saluton egonw
10:13 jprieur egonw: hi, I'd like to know if using xws4j would be suitable for developing an XMPP component that doesn't use XEP-0244 (i.e. does xws4j implements XEP-0114 or 0225?)
10:13 egonw @gg XEP-0114
10:13 zarah egonw: http://xmpp.org/extensions/xep-0114.html
10:13 egonw @gg XEP-0225
10:13 zarah egonw: http://xmpp.org/extensions/xep-0225.html
10:15 egonw jprieur: no, don't think so
10:15 egonw jprieur: ask edrin when he comes online to get the final answer
10:18 jprieur egonw: oh ok, thanks. I confused you both. Certainly because your nicknames starts with a 'e' and lengths 5 characters, poor hash :D
10:20 egonw no worries...
10:20 egonw I helped edrin
10:20 egonw with the XEP
10:20 egonw but he did the ref implementation
10:20 egonw and knows all about that...
10:20 egonw but as far as I know, xws4j only does the IO-DATA XEP
10:23 jprieur egonw: but xws4j is used to develop standalone XMPP service components so I guess it also implements the component protocol to be able to talk with the server
10:23 jprieur I'll find out by reading the code
10:27 egonw oh... good point...
10:27 egonw that might actually be the same 'component'...
10:36 egonw jprieur: if those two xeps are about linking a component to, e.g. ejabberd, then you are probably right...
10:58 jprieur joined #bioclipse
11:03 olass hi egonw
11:03 olass egonw: did you manage to solve the CML atom type issue?
11:04 olass egonw: I noticed you rocmments about corner case in CDK
11:04 olass is it a tricky bastard?
11:09 egonw no, it's fixed
11:10 jprieur egonw: it seems xws4j uses https://jso.dev.java.net/ to do what I want to do
11:14 egonw ah... yes
11:15 egonw and that implements those xeps
11:15 egonw ok, makes sense
11:15 egonw sorry for the confusion
11:24 egonw olass: but I still need to set up a bioclipse.cdk branch
11:25 egonw olass: but that's a bit tricky, because I did things a bit ad hoc in the past...
11:25 egonw and there is an accumulation of patches not in upstream...
11:25 egonw and have trouble making up my mind about what is the best way to proceed...
11:25 olass egonw: I'd really appreciate you doing this... it is important for me to get this fixed asap...
11:26 olass egonw++ //good job btw
11:26 egonw yes, but I don't want to break things...
11:26 olass true
11:26 olass but this must go in 2.0.x
11:26 egonw one step forward, but ten back...
11:26 egonw right
11:26 egonw even worse
11:26 egonw I want to go with cdk master for 2.1
11:27 olass yes, I agree
11:27 egonw but 2.0 must remain with 1.2.x
11:27 olass IMO, 2.1 is Eclipse 3.5, Java6, and master
11:27 olass at a defined point
11:27 egonw and meanwhile installing kubuntu in the lives of farther-in-law and mother-in-law
11:36 masak I hate the way implementing classes from interfaces causes F3 in Eclipse to lead you to the totally useless interface method definition, not to the right class. :/
11:38 olass masak: indeed
11:42 stain try Ctrl-T
11:44 masak stain: cool, thanks!
11:44 masak next complaint: why the heck does the Insert key map to "Help"?
11:48 egonw olass: http://pele.farmbio.uu.se/cgi-bin/gitweb.cgi?p=​cdk.git;a=shortlog;h=refs/heads/bioclipse-2.0.x
11:48 zarah egonw's link is also http://tinyurl.com/lv6czt
11:48 egonw olass: the start is there...
11:48 egonw now the porting of all patches
11:49 olass egonw: ok, when you have ported packages, can I git clone that one?
11:49 egonw sorry, not enough information to compute the answer
11:49 olass ok
11:54 * masak gets a funny error from Biojava
11:54 masak "Something has gone badly wrong with RNA"
11:54 masak ^_^
12:24 egonw http://friendfeed.com/the-life-scientists/7145​b89e/does-anyone-have-any-good-bad-interesting
12:24 zarah egonw's link is also http://tinyurl.com/lkzto5
12:24 egonw "Only downside, in my very limited experience, is a lack of software tools to do anything useful with the files."
13:18 edrin joined #bioclipse
13:19 edrin hi
13:19 zarah oh hai edrin
13:20 olass hi edrin
13:47 masak oh hai edrin
15:20 edrin who is jprieur?
15:20 edrin zarah: ping
15:20 zarah edrin: pong
15:28 egonw edrin: someone who asked about xws4j
15:28 egonw if that also supported component related xeps
15:29 edrin egonw: I was wondering since i got Kudo from him
15:29 edrin and anyone could answer his question?
15:29 egonw good :)
15:29 egonw yes, in the end
15:31 egonw I was wrong, because I did not recognize the xeps he mentioned
15:31 egonw but they were about the JSO stuff
15:31 jprieur joined #bioclipse
15:32 egonw which he figured out himself
15:34 edrin hi jprieur
15:34 jprieur hey edrin
15:34 edrin thanks for a Kudo :)
15:35 jprieur edrin: it doesn't cost me much ;) and there's code that can help me in xws4j so thank you
15:36 edrin are you interested in xmpp (web) services or mainly in how to write a connecting server component?
15:37 jprieur edrin: I was looking for a java LGPL library to write a component and found out xws4j is using JSO
15:38 jprieur even if it seems unmaintained, JSO should do it for me
15:39 edrin yes
15:40 edrin jprieur: it's not really "unmaintained", the author is just not working on it
15:40 edrin maybe he will if you ask him
15:41 jprieur edrin: the CVS and main website are down, it felt unmaintained :)
15:41 edrin yes, i c
15:42 edrin linuxwolf <linuxwolf@outer-planes.net> that's his JID
15:43 jprieur ok, thanks
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17:36 edrin have to leave cu
17:40 edrin left #bioclipse
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20:37 olass joined #bioclipse
20:43 egonw olass: ha, great timing! :)
20:43 olass hi egonw
20:44 olass just wanted to pop in
20:44 egonw olass: I just uploaded CDK 1.2.3.0bioclipse1 to the bioclipse 2.0.x branch
20:44 olass great!
20:44 egonw based on http://pele.farmbio.uu.se/cgi-bin/gitweb.cgi?p=​cdk.git;a=shortlog;h=refs/heads/bioclipse-2.0.x
20:44 zarah egonw's link is also http://tinyurl.com/lv6czt
20:44 olass so I can pull now from your github?
20:44 egonw yes
20:44 olass what is pele for?
20:44 egonw I only very briefly tested it
20:45 egonw and it needs more testing before a 2.0.1 release, IMO
20:45 olass ok
20:45 olass did the unit tests run?
20:46 egonw good one
20:46 egonw we have them for a reason
20:46 egonw hang on
20:49 * olass is hanging on
20:50 egonw they don't run at all
20:50 egonw resetting target platform
20:52 egonw eclipse is confused about what plugin version to use
20:52 egonw or so...
20:52 egonw !MESSAGE Bundle reference:file:/usr/local/eclipse3.4.2_64/plugin​s/org.eclipse.wst.sse.ui_1.1.4.v200901202345.jar [24] was not resolved.
20:53 egonw !SUBENTRY 2 org.eclipse.wst.sse.ui 2 0 2009-07-29 22:51:01.598
20:53 egonw !MESSAGE Another singleton version selected: org.eclipse.wst.sse.ui_1.1.100.v200905141750
20:54 olass yes, I always need to reset target platform before running plugin-junit tests
20:54 egonw did that twice now
20:58 egonw 64bit--
21:01 olass I will try tomorrow
21:02 olass need to sleep now... deadly tired...
21:02 olass zzzZZZzzzz....
21:02 olass bye
21:02 egonw !MESSAGE Missing Constraint: Bundle-RequiredExecutionEnvironment: JavaSE-1.6

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