Camelia, the Perl 6 bug

IRC log for #bioclipse, 2009-08-04

| Channels | #bioclipse index | Today | | Search | Google Search | Plain-Text | summary

All times shown according to UTC.

Time Nick Message
04:03 Gpox joined #bioclipse
06:35 Gpox joined #bioclipse
06:36 Gpoks joined #bioclipse
06:45 Gpox joined #bioclipse
07:02 sneumann joined #bioclipse
07:17 egonw joined #bioclipse
08:06 shk3 joined #bioclipse
08:24 jonalv joined #bioclipse
08:53 CIA-63 bioclipse.structuredb: jonalv master * r03b310c / plugins/net.bioclipse.structuredb.te​sts/tests/net/bioclipse/structuredb/​business/StructuredbManagerTest.java : Added test for addMoleculesFromSDF. However it can't be run. It needs to be run as a plugin test. Too many deps on stuff like CDK and other things... :( - http://bit.ly/i0xTY
09:16 olass joined #bioclipse
09:33 egonw shk3: ping
09:33 egonw shk3: is the http://nmrshiftdb.chemie.uni-mainz.de/axis still OK?
09:33 zarah egonw's link is also http://tinyurl.com/lwlvw4
09:34 egonw it's not, is it?
09:34 egonw http://www.ebi.ac.uk/nmrshif​tdb/axis/services/NMRShiftDB ?
09:34 zarah egonw's link is also http://tinyurl.com/mnrqnk
09:35 egonw that link does not work...
09:35 egonw faultString: The AXIS engine could not find a target service to invoke!  targetService is NMRShiftDB/services/NMRShiftDB
09:35 shk3 axis is running at http://www.ebi.ac.uk/nmrshiftdb/axis/
09:35 zarah shk3's link is also http://tinyurl.com/l4pv5n
09:36 shk3 your URL http://www.ebi.ac.uk/nmrshif​tdb/axis/services/NMRShiftDB
09:36 zarah shk3's link is also http://tinyurl.com/mnrqnk
09:36 shk3 should be ok
09:36 egonw will try your variant
09:37 shk3 not sure which sub url you need for which purpose
09:37 shk3 but in general, it works same as before
09:38 shk3 just www.ebi.ac.uk/nmrshiftdb/axis instead of nmrshiftdb.uni-mainz.de/axis
09:38 egonw ack
09:38 egonw that one seems to work
09:38 egonw at least without the trailing slash
09:38 egonw now stuck with password wrong
09:40 shk3 that should not have changed
09:41 egonw Caused by: java.rmi.RemoteException: Username and/or password invalid; nested exception is:
09:41 egonw java.lang.Exception: Username and/or password invalid
09:42 shk3 is the password working in the web interface?
09:43 egonw btw, cannot change my affiliation at the EBI interface
09:43 egonw which still says very, very outdated info
09:44 egonw yes, the web seems pwd ok
09:45 egonw and the stats on the ebi machine are emtpy
09:46 egonw and is there only one node left? just the EBI node?
09:46 shk3 i will have a look
09:46 egonw ok, lunch time
09:46 shk3 the stats are a known problem
09:46 egonw sushi time
09:46 egonw bbl
09:46 shk3 yes, christoph decided to have only that
09:54 shk3 editing account info works for me
10:06 shk3 the password seems to work as well
10:59 CIA-63 bioclipse: shk3 * r11711 /bioclipse2/trunk/plugins/net.bioc​lipse.nmrshiftdb/html/submit.html: updated help
11:10 ChanServ joined #bioclipse
11:10 egonw joined #bioclipse
11:10 Gpox joined #bioclipse
11:10 CIA-63 joined #bioclipse
11:10 miguelrojasch joined #bioclipse
11:10 ilogger2 joined #bioclipse
11:16 ChanServ joined #bioclipse
11:16 CIA-63 bioclipse: shk3 * r11712 /bioclipse2/trunk/plugins/net.bioclipse.spectrum/ (5 files in 3 dirs): added menu items for spectrum similarity calculation, updated help.
11:19 CIA-63 bioclipse: shk3 * r11713 /bioclipse2/trunk/plugins/net.bioclips​e.spectrum/src/net/bioclipse/spectrum/ (4 files in 2 dirs): added menu items for spectrum similarity calculation, updated help.
11:19 CIA-63 bioclipse: shk3 * r11714 /bioclipse2/trunk/plugins/net.bioc​lipse.specmol/html/maintopic.html: updated help
11:19 CIA-63 bioclipse: shk3 * r11715 /bioclipse2/trunk/plugins/net.biocli​pse.nmrshiftdb/html/maintopic.html: updated help
11:19 CIA-63 bioclipse: shk3 * r11716 /bioclipse2/trunk/plugins/net.b​ioclipse.bibtex/doc/about.html: updated help
11:24 ChanServ joined #bioclipse
11:24 Gpox joined #bioclipse
11:26 ChanServ joined #bioclipse
11:26 Gpox joined #bioclipse
11:26 egonw joined #bioclipse
11:26 CIA-63 joined #bioclipse
11:26 miguelrojasch joined #bioclipse
11:26 ilogger2 joined #bioclipse
12:16 olass joined #bioclipse
12:16 jonalv joined #bioclipse
12:51 CIA-63 bioclipse: shk3 * r11717 /bioclipse2/trunk/plugins/net.biocli​pse.seneca/src/net/bioclipse/seneca/​ga/MoleculeEvolutionObserver.java: ga result only contains improved structures, not every step
13:04 egonw shk3: if I change account details one by one it seems to work
13:04 egonw but it does feel when I remove the Address
13:05 egonw or with an empty ZIP code
13:05 egonw it seems to have trouble with empty fields...
13:05 egonw maybe that's why it kept failing for me
13:28 shk3 joined #bioclipse
13:28 mgerlich joined #bioclipse
13:28 zarah joined #bioclipse
13:29 ChanServ joined #bioclipse
13:29 ilogger2 joined #bioclipse
13:29 miguelrojasch joined #bioclipse
13:29 CIA-63 joined #bioclipse
13:29 egonw joined #bioclipse
13:29 jonalv joined #bioclipse
13:29 olass joined #bioclipse
13:35 jonalv @pz 1458
13:35 zarah http://pele.farmbio.uu.se/cgi-bi​n/bugzilla/show_bug.cgi?id=1458
13:43 * egonw is anotating gists with 'version:2.0.0' if they work properly with that version
14:08 edrin joined #bioclipse
14:08 edrin hi
14:08 zarah hi edrin
14:08 egonw hi edrin
14:09 edrin hi egonw
14:15 egonw olass: try this:
14:16 egonw http://delicious.com/tag/bi​oclipse+gist+version:2.0.0
14:16 zarah egonw's link is also http://tinyurl.com/mde6vn
14:16 egonw that's the list of gists working in the bioclipse-2.0.x branch
14:16 edrin I am sorry, I am very occupied these days
14:16 egonw with the scripts so far tested, I think the branch is good to go for 2.0.1
14:17 egonw edrin: that's what I understood
14:17 egonw edrin: no news on the paper yet?
14:17 edrin no
15:06 shk3_ joined #bioclipse
15:57 CIA-63 bioclipse: shk3 * r11718 /bioclipse2/trunk/plugins/net.biocli​pse.seneca/src/net/bioclipse/seneca/ (16 files in 6 dirs): aromaticity is handled
16:41 CIA-63 bioclipse: shk3 * r11719 /bioclipse2/trunk/plugins/net.biocl​ipse.spectrum/src/net/bioclipse/spe​ctrum/editor/PeakTableViewer.java: added an export peak table to clipboard facility
16:58 jonalv -quit
17:05 edrin left #bioclipse
18:22 egonw joined #bioclipse
18:22 CIA-63 bioclipse.cheminformatics: Egon Willighagen master * rb0d1e49 / (27 files in 9 dirs): Removed plugin already available from bioclipse.core - http://bit.ly/Bb2nT
18:25 CIA-63 bioclipse.core: Egon Willighagen master * rbd59959 / (11 files in 6 dirs): Removed plugin and feature already available from bioclipse.experimental - http://bit.ly/2NbEdp
18:25 CIA-63 bioclipse.core: Egon Willighagen master * r2468ca7 / (4 files): Removed feature more suitable present in bioclipse.data - http://bit.ly/ODI4N
18:25 CIA-63 bioclipse.core: Egon Willighagen master * r3ea9c0c / (8 files): Removed autogenerated files, until the next release, probably - http://bit.ly/15uln8
18:26 CIA-63 bioclipse.rdf: Egon Willighagen master * r97df165 / plugins/net.bioclipse.rdf/src/net/bi​oclipse/rdf/business/RDFManager.java : Implementation should not implement the matching interface - http://bit.ly/ETNLU
18:26 CIA-63 bioclipse.rdf: Egon Willighagen master * r8b99199 / (12 files in 3 dirs): Added the test suite framework for the RDF plugin - http://bit.ly/dxOC0
18:26 CIA-63 bioclipse.rdf: Egon Willighagen master * r726ad27 / plugins/net.bioclipse.rdf/src/net/bi​oclipse/rdf/business/RDFManager.java : Removed two helper methods no longer needed in the NWO world - http://bit.ly/uyH8Y
18:26 CIA-63 bioclipse.rdf: Egon Willighagen master * r226edcf / plugins/net.bioclipse.rdf/src/net/bio​clipse/rdf/business/IRDFManager.java : Added three wanna-have methods for the paper - http://bit.ly/2p7xft
18:26 CIA-63 bioclipse.rdf: Egon Willighagen master * r962ecd8 / (2 files in 2 dirs): Added two missing unit tests: testCreateStore and testDump - http://bit.ly/wGFcZ
19:21 egonw joined #bioclipse
19:21 sneumann joined #bioclipse
19:33 CIA-63 bioclipse: egonw * r11720 /bioclipse2/trunk/features/ (net.bioclipse.cdkws09-feature/ net.bioclipse.sampledata/): Removed two features available from git repositories
21:43 olass joined #bioclipse

| Channels | #bioclipse index | Today | | Search | Google Search | Plain-Text | summary