Camelia, the Perl 6 bug

IRC log for #bioclipse, 2009-08-21

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All times shown according to UTC.

Time Nick Message
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07:45 jonalv oh hai
07:45 zarah hello jonalv, you fantastic person you
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08:36 CIA-63 bioclipse.core: jonalv master * r33a67d2 / (2 files in 2 dirs):
08:36 CIA-63 bioclipse.core: Log out the current use when opening preferences.
08:36 CIA-63 bioclipse.core: It logs out the current user direct so that the user that is to be edited can be logged in. After this we can't log in the first user again. A password would be needed... Fixes bug: #807 - http://bit.ly/36IdwC
08:36 zarah bug #0807 | http://tinyurl.com/nwq4m8
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10:51 jonalv oh hai
10:51 zarah saluton jonalv
10:52 jonalv joined #bioclipse
10:53 jonalv @ping
10:53 zarah jonalv: pong
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12:22 CIA-63 bioclipse.structuredb: jonalv FileStore * r638f7c1 / (5 files in 5 dirs):
12:22 CIA-63 bioclipse.structuredb: Wrote tests for constructor.
12:22 CIA-63 bioclipse.structuredb: Make sure it only takes directories. - http://bit.ly/r8NaM
12:22 CIA-63 bioclipse.structuredb: jonalv FileStore * rf4fc866 / plugins/net.bioclipse.filestore/src/n​et/bioclipse/filestore/FileStore.java :
12:22 CIA-63 bioclipse.structuredb: Fullfilled constructor test.
12:22 CIA-63 bioclipse.structuredb: Only directories are excepted now, no files. - http://bit.ly/FKJ9Z
12:22 CIA-63 bioclipse.structuredb: jonalv FileStore * ra983ef5 / plugins/net.bioclipse.filestore.tests/src/net​/bioclipse/filestore/tests/FileStoreTest.java : Tests for storing. - http://bit.ly/289ZZa
12:22 CIA-63 bioclipse.structuredb: jonalv FileStore * r4d72167 / plugins/net.bioclipse.filestore/src/n​et/bioclipse/filestore/FileStore.java : fullfilled tests for storing - http://bit.ly/TIHNX
13:02 egonw joined #bioclipse
13:04 egonw moin
13:04 zarah oh hai egonw
13:12 olass hi egonw
13:12 egonw hi olass
13:12 egonw back from Uppsala
13:12 egonw to get a ID-kort
13:12 olass success?
13:12 egonw well, it is successfully requested now
13:12 egonw my passport was too old
13:13 egonw so Karin had to come along to testify that I am me :)
13:13 egonw her passport was recent enough
13:14 jonalv Eclipse++
13:14 egonw jonalv: how so?
13:15 egonw jonalv: you got exporting working again?
13:15 jonalv "Null pointer access: The variable writer can only be null at this location" directly in the editor window
13:16 jonalv egonw: I don't know. I haven't dared trying again. I am having one of those friday afternoons...
13:16 jonalv Building a file storage for StrucutreDB :)
13:18 egonw ack
13:19 jonalv we at bmc ar runnign a "somewhere over the rainbow" marathon spotify++
13:20 jonalv :)
13:21 olass jonalv: are you making fun of me?
13:22 jonalv olass: no I would never (at least not today:)
13:22 jonalv olass: why?
13:22 olass jonalv: C-u C-\ swedish-postfix RET
13:23 jonalv olass: är du nöjd nu?
13:23 olass jonalv: I see.
13:23 jonalv olass: you just failed the Zarah test
13:23 olass jonalv: I see.
13:23 masak :)
13:23 olass masak: are you making fun of me?
13:24 masak olass: that was not very easy for a little bot to understand.
13:24 olass hooray, hooray, hooray!
13:24 olass hmm
13:24 olass almost
13:24 olass :)
13:30 egonw olass: let me know when you plugged in that extra 2GB of pele memory
13:30 olass ?
13:30 egonw looking forward to seeing it have 6GB
13:30 olass I will not
13:30 olass Magnus will
13:31 olass but will ask him to when at BMC
13:31 olass or you ask him when you see him
13:31 olass the mems are in my room
13:32 olass egonw: We need to sort out at some time how to get the infosys (standalone help) for Bioclispe up on autostart
13:33 egonw you can use the same kind as crontab as you use for the xmpp services you run
13:33 olass will need your help with that some day
13:34 olass I am not fluent with that
14:08 egonw all: please have look at this feature request... and comment
14:08 egonw @pz 1541
14:08 zarah http://pele.farmbio.uu.se/cgi-bi​n/bugzilla/show_bug.cgi?id=1541
14:13 olass egonw: done
14:13 masak egonw: I don't know much about the bioclipse manager, but it sounds more fitting than the ui manager. the latter seems to be getting a misc-like treatment sometimes.
14:13 egonw masak: please C/P that into the bug report
14:13 masak hokay.
14:23 CIA-63 bioclipse.structuredb: jonalv FileStore * r8fdd984 / (2 files in 2 dirs): Wrote tests for retrieving fileContent - http://bit.ly/yQk5O
14:23 CIA-63 bioclipse.structuredb: jonalv FileStore * r75b88ba / (2 files in 2 dirs):
14:23 CIA-63 bioclipse.structuredb: A basic FileStore.
14:23 CIA-63 bioclipse.structuredb: Saves files in a directory tree witha depth of 1 (as of yet) that is the first letter in the UUID (filename) is used for creating a directory where the file will be saved. - http://bit.ly/4jqK89
14:26 shk3 I am moving speclipse plugins.
14:26 shk3 does somebody know about the status of the webservices plugin?
14:26 shk3 will it be around in the future?
14:27 shk3 I am using it for providing axis libs, which I could easily put in my own plugin
14:27 egonw isn't that part of bioclipse.core ?
14:27 shk3 really
14:27 shk3 don't think so
14:27 shk3 mom
14:27 egonw ah no
14:27 egonw but it is of
14:27 egonw bioclipse.cheminformatics
14:27 shk3 ah
14:27 shk3 good
14:28 egonw shk3: agreed
14:28 shk3 then I depend on it anyway
14:28 egonw those axis libs should be in a separate plugin
14:28 egonw so that we also have proper versioning
14:28 egonw yes, that should be no problem
14:41 egonw http://www.myexperiment.org/workflows/889
14:41 zarah egonw's link is also http://tinyurl.com/l6od5e
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15:05 shk3 egonw: can you help me with that?
15:06 egonw did you check out the bioclipse.rdf repository ?
15:06 shk3 mom
15:06 shk3 no
15:06 egonw xws4j is still in SVN
15:07 shk3 do I need that?
15:07 shk3 worked without, but i will do
15:07 egonw edrin needs to move that to git when he is ready for that
15:07 egonw bioclipse.rdf is needed for bioclipse.qsar
15:07 shk3 so I need to check out that from svn in same workspace?
15:07 egonw xws4j, yes
15:08 egonw edrin: any ETA for you moving your plugins to a git repository?
15:08 egonw edrin: have you considered that yet?
15:09 edrin edrin: what is ETA?
15:09 edrin egonw: what is ETA?
15:10 egonw Estimated Time of Arrival
15:10 edrin no, not yet, probably not this week and not next week
15:10 edrin i have to install eclipse first for example
15:11 edrin then checkout bioclipse from git
15:11 edrin and then i can move the things
15:11 shk3 don't hurry
15:11 edrin i am very busy with other things right now
15:11 shk3 I don't press
15:11 shk3 just needed to know what to do
15:11 edrin thanks :)
15:30 * jonalv gives up for now
15:30 jonalv (it was not so very easy to just move the molecules into files instead of in the database)
15:30 jonalv but it should be doable..
15:31 egonw yeah, sounds interesting
15:41 jonalv egonw: it's sort of the same problem that we talked about before...
15:42 egonw yes, I know
17:21 CIA-63 bioclipse.joelib: Egon Willighagen master * r57acd06 / plugins/net.bioclipse.joelib.qsar/src/net/bioclips​e/joelib/qsar/impl/JOELibDescriptorCalculator.java : Simplified code: use a Map to link IDs to implementation - http://bit.ly/d6MVz
17:21 CIA-63 bioclipse.joelib: Egon Willighagen master * r2288265 / (2 files in 2 dirs): Uploaded JOELib2 release of 20090613 (fixes #1534) - http://bit.ly/EzAhR
17:21 CIA-63 bioclipse.joelib: Egon Willighagen master * re0cdbe8 / (2 files in 2 dirs): Updated for JOELib2 - http://bit.ly/J5jsz
17:21 zarah bug #1534 | http://tinyurl.com/l9c6r8
17:26 edrin egonw: available??
17:26 egonw briefly...
17:26 egonw was just about to get downstairs to get kids to bed...
17:26 egonw what's up?
17:26 egonw nice of Tuomas to back up the XEP
17:27 edrin egonw: check your mails in 30 seconds
17:27 edrin hm
17:28 edrin maybe I should have added a comment from like Congrats!
17:28 egonw right! Congrats!
17:28 edrin :)
17:29 egonw edrin: well done!
17:29 egonw ok, gonna take kids to bed now
17:29 edrin yes, thanks, was only with your help
17:29 edrin yes
17:30 edrin have a nice evening
17:30 edrin ciao
17:30 egonw same to you
17:30 egonw have a beer to celebrate it!
17:30 egonw I will :)
17:30 egonw bye
17:31 edrin bye :)
19:32 edrin left #bioclipse

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