Camelia, the Perl 6 bug

IRC log for #bioclipse, 2009-09-03

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All times shown according to UTC.

Time Nick Message
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08:02 egonw_ moin
08:02 zarah hello egonw_, you fantastic person you
08:03 egonw so, who wants a Google Wave demo this afternoon? ;)
08:10 jonalv egonw, Gpox: http://gist.github.com/180175
08:13 egonw Gpox: please commit your patches to make things go in 3.5
08:14 Gpox I got no patches
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08:56 egonw jonalv, Gpox: updated wiki and sent email to -devel
08:57 jonalv egonw: sounds good
09:09 * jonalv is installing plugins in Eclipse 3.5
09:09 jonalv Vrapper++
09:09 jonalv http://vrapper.sourceforge.net/home/
09:09 zarah jonalv's link is also http://tinyurl.com/dffzxl
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09:22 * samuell is still finishing his project plan
09:27 egonw Gpox: can you come over for a sec?
09:28 Gpox ok
09:33 CIA-63 bioclipse.core: Arvid Berg master * r9a2ab35 / (2 files): Removed unused imports so dependencies can be removed - http://bit.ly/18eFtj
09:33 CIA-63 bioclipse.core: Arvid Berg master * r7d25197 / features/net.bioclipse.platfo​rm_feature/bioclipse.product :
09:33 CIA-63 bioclipse.core: Removed plugins list from bioclipse.product
09:33 CIA-63 bioclipse.core: As we uses feature build it should not be needed. - http://bit.ly/5xPte
09:33 CIA-63 bioclipse.core: Arvid Berg master * r34fb886 / plugins/net.bioclipse.core/META-INF/MANIFEST.MF : Removed org.ec.jface.text and org.ec.ui.workbench.texteditor from net.bc.core - http://bit.ly/1753bN
09:33 CIA-63 bioclipse.core: Arvid Berg master * rbdb5d8a / features/net.bioclipse.core_feature/feature.xml :
09:33 CIA-63 bioclipse.core: Added missing plugins and feature
09:33 CIA-63 bioclipse.core: org.eclipse.compare.core
09:33 CIA-63 bioclipse.core: org.mortbay.jetty.server
09:33 CIA-63 bioclipse.core: org.mortbay.jetty.util
09:33 CIA-63 bioclipse.core: org.eclipse.equinox.p2.user.ui
09:33 CIA-63 bioclipse.core: removed org.mortbay.jetty because it was 5.* and not 6.* - http://bit.ly/TglXC
09:58 CIA-63 bioclipse.sdk: Egon Willighagen master * r56bff5d / plugins/net.bioclipse.doc.dev​elopers/META-INF/MANIFEST.MF : No need to import log4j in a doc plugin - http://bit.ly/14F8Bp
09:58 CIA-63 bioclipse.sdk: Egon Willighagen master * r143ec28 / updateSites/net.bioclipse.sdk_updateSite/site.xml : Uploaded a new version to Pele - http://bit.ly/18iccc
09:58 CIA-63 bioclipse.sdk: Egon Willighagen master * r7ceb537 / updateSites/net.bioclipse.​sdk_updateSite/.gitignore : Ignore the newly created jars made by 3.5 - http://bit.ly/11Uy45
10:09 jonalv lunch!
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11:51 CIA-63 bioclipse.sdk: Egon Willighagen master * r57e434d / (20 files in 10 dirs): Added test project wizard in new style - http://bit.ly/woAcs
11:51 egonw Gpox: could you possibly drop by once more... ? the test plugin is now implemented, but for both I get some weird issue...
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11:54 masak egonw: my commits don't show up on the bioclipse-commit list. neither have I seen CIA-63 report them for a while.
11:55 edrin hi
11:55 zarah hello edrin, you fantastic person you
11:56 edrin egonw: any objections regarding the paper? should I submit
11:56 egonw I have not spotted any errors, but did not have a very close look
11:56 egonw I'll print it today, and check it tonite, OK?
12:00 egonw masak: file a bug report on pelezilla please
12:01 masak ok.
12:02 CIA-63 bioclipse.sdk: Egon Willighagen master * r2abb7c1 / (2 files): Made an dep on org.apache.log4j an import - http://bit.ly/4E4Drr
12:03 edrin egonw: ok
12:06 egonw Gpox: anothing thingy... the source files are not created...
12:06 egonw Gpox: can you help me with that?
12:09 shk3 platform_feature and chemoinformatics_feature in git are set to 2.1.0,
12:09 shk3 but there is no such release for download.
12:09 shk3 Is that intended?
12:10 jonalv shk3: there is
12:10 jonalv shk3: is that in master btw?
12:11 shk3 looks like
12:11 jonalv shk3: http://pele.farmbio.uu.se/bioclipse-devel/
12:11 zarah jonalv's link is also http://tinyurl.com/l7lteh
12:11 shk3 I've got master and got it
12:11 jonalv shk3: yes it's as planned
12:11 samuell Does anyone have good or bad to say about this book: http://tinyurl.com/javadevsguidetoeclipse ? Looks interesting for me. Possible to borrow from somewhere?
12:12 shk3 hm, shouldn't download be at https://sourceforge.net/projects/bioclipse/files/
12:12 * jonalv has not read that book
12:12 shk3 ?
12:13 jonalv shk3: you ahve to take that with olass or egonw, apharently they don't want to place development releases on sourceforge. I don't know why...
12:13 shk3 I don't mind
12:13 shk3 was just curious
12:14 jonalv oki
12:14 jonalv samuell: but we have plenty Eclipse books already...
12:15 shk3 jonalv: another question
12:15 shk3 it seems update sites were removed from bioclipse
12:15 shk3 is that intended?
12:16 jonalv shk3: huh? No I don't think so
12:16 shk3 I only get the bioclipse "core" update site
12:16 shk3 will file a bug report
12:17 jonalv shk3: whixh else did you expect?
12:18 shk3 speclipse
12:18 jonalv yea that would be nice...
12:23 jonalv sourceforge--
12:23 * jonalv is looking at the CDK wiki. It's trapped in an a Sourceforge "frame"
12:31 samuell jonalv: Ok
12:38 CIA-63 bioclipse.sdk: Egon Willighagen master * r9dae25e / (57 files in 21 dirs): Removed references to Eclipse 3.4, now that it is a 3.5 plugin - http://bit.ly/YI5c7
12:38 CIA-63 bioclipse.sdk: Egon Willighagen master * r57c5d4a / (33 files in 13 dirs): Moved the templates into a _3.5 folder, but the results still do not show up :( - http://bit.ly/2WaY5R
12:39 jonalv egonw: tack
13:02 egonw Gpox: I now uploade 1.1.6 to the update site
13:02 egonw which is base on the old Templater code...
13:02 egonw Gpox: that code is int he stable-1.0.x branch
13:03 egonw while your code is in master
13:03 egonw I hope you can find the problem tomorrow or so...
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13:14 CIA-63 bioclipse.core: Egon Willighagen master * rabe3ae3 / plugins/net.sourceforge.jse​ditor/META-INF/MANIFEST.MF : Added a missing dependency on net.bioclipse.core - http://bit.ly/s7YOz
13:15 Gpox egonw: it should be templates_3.4
13:15 egonw it should?
13:15 egonw but that was it before...
13:15 egonw and it did not work then either..
13:15 egonw does it work for you nowwwwwwwww?
13:16 egonw (stupid keyboard)
13:16 Gpox yes it did once renamed
13:16 egonw weird..
13:16 egonw ok, please commit
13:16 egonw I will look at it tomorrow
13:20 CIA-63 bioclipse.sdk: Arvid Berg master * r2858ee2 / (30 files in 10 dirs):
13:20 CIA-63 bioclipse.sdk: Renamed templates_3.5 to templates_3.4
13:20 CIA-63 bioclipse.sdk: 3.4 indicates schemaVersion and is retrived by
13:20 CIA-63 bioclipse.sdk: model.getPluginBase().getSchemaVersion() - http://bit.ly/YBmU6
13:20 egonw Gpox++
13:27 egonw jonalv: that patch is against CDK master?
13:39 jonalv gyup
13:39 egonw huh?
13:39 jonalv egonw: |ypu
13:39 jonalv gah
13:39 jonalv |yup
13:39 jonalv egonw: was that wrong?
13:41 egonw no, it's fine... it's just I have no clue what you are trying to tell me
13:41 jonalv egonw: okey, I thought all development was against master unless it was specific bug fixes...
13:41 egonw yes, true
13:41 egonw jonalv++
13:49 egonw btw, your patch is not showing up in my fork queue
13:50 jonalv egonw: intresting, how did you know I made one then_
13:51 egonw beats me
13:51 egonw github--
14:19 jonalv (Eclipse 3.5)++
14:38 * samuell is leaving in 7 min
14:43 * egonw is leaving too
14:43 egonw Bioclipse based on 3.5 is running here...
14:43 egonw with a stacktrace when opening an SD file, though
14:43 jonalv egonw: birt?
14:43 egonw no, don't think so
14:43 egonw this was moderately succesfull
14:45 jonalv egonw: Brunn is working much better though. (when I start it by adding required plugins)
14:45 egonw good
14:45 jonalv egonw: they have fixed many things
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