Camelia, the Perl 6 bug

IRC log for #bioclipse, 2009-09-08

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All times shown according to UTC.

Time Nick Message
06:13 masak joined #bioclipse
06:25 egonw joined #bioclipse
06:34 Gpox joined #bioclipse
07:02 miguelrojasch joined #bioclipse
07:04 miguelrojasch moin
07:04 zarah privet miguelrojasch
07:05 egonw hi miguelrojasch
07:06 miguelrojasch is http://github.com/olas/bioclipse.qsar/tree/master free of errors? Because I just clone and I have some. And I don't know if I my fault
07:06 zarah miguelrojasch's link is also http://tinyurl.com/m935yy
07:09 miguelrojasch hi egonw
07:09 miguelrojasch left #bioclipse
07:10 egonw @tell miguelrojasch no, that one is not... I have patches in my copy of the branch and already asked Ola to merge...
07:10 zarah Consider it noted.
07:14 CIA-61 bioclipse.sdk: Egon Willighagen master * rae6486c / (3 files in 3 dirs): Released 1.1.7 - http://bit.ly/tXGG1
07:15 egonw see http://chem-bla-ics.blogspot.com/2009/0​9/updated-bioclipse-sdk-eclipse-35.html
07:15 zarah egonw's link is also http://tinyurl.com/lzllg6
08:12 shk3 joined #bioclipse
08:14 Gpox joined #bioclipse
08:16 egonw joined #bioclipse
08:16 jonalv joined #bioclipse
08:17 egonw moin
08:17 zarah oh hai egonw
08:24 samuell joined #bioclipse
08:37 egonw https://sourceforge.net/apps/mediawiki/cd​k/index.php?title=JChemPaintWorkshop2009
08:47 CIA-61 bioclipse.medea: Egon Willighagen master * r284eb41 / plugins/net.bioclipse.medea​.test/META-INF/MANIFEST.MF : Added missing dependency - http://bit.ly/5qkEV
08:47 CIA-61 bioclipse.medea: Egon Willighagen master * rb8ae35c / plugins/net.bioclipse.medea/META-INF/MANIFEST.MF : Added spring plugins - http://bit.ly/XhxDv
08:47 CIA-61 bioclipse.medea: Egon Willighagen master * rb3b3961 / plugins/net.bioclipse.medea.test/src​/net/bioclipse/medea/business/test/A​bstractMedeaManagerPluginTest.java : Updated unit tests for recent change: predict and learn now returns a reaction scheme, which can be converted in a spectrum separately - http://bit.ly/jAIPI
08:47 CIA-61 bioclipse.medea: Egon Willighagen master * r5ce6d6e / (4 files in 4 dirs): Removed hardcoded versions to make Eclipse 3.5 happy - http://bit.ly/ApYs9
09:11 olass joined #bioclipse
09:19 olass moin
09:19 zarah hi olass
10:16 miguelrojasch joined #bioclipse
10:29 stain hi!
10:29 zarah hi stain
10:30 stain I'm thinking of using git (or something similar) with my Eclipse, just to keep my different machines in sync.. what is the easiest way to use git and eclipse together on Windows?
10:30 stain commandline? cygwin og mgwin-version? the eclipse plugin?
11:26 egonw joined #bioclipse
11:28 jonalv stain: You probably could try the Eclipse plign
11:29 jonalv stain: but rumour is that it can be done: http://kylecordes.com/2008​/03/22/git-windows-works/
11:29 zarah jonalv's link is also http://tinyurl.com/692n4k
11:31 Gpox joined #bioclipse
12:23 edrin joined #bioclipse
12:23 edrin hi
12:23 zarah ni hao edrin
12:24 edrin egonw, available?
12:24 egonw sort of
12:24 egonw in the middle of a talk, but online :)
12:26 edrin egonw: I sent you a query
13:14 egonw gonna relocate to another room
13:14 egonw bbl'
13:25 Gpox joined #bioclipse
13:27 egonw joined #bioclipse
13:27 CIA-61 bioclipse.structuredb: jonalv FileStore * r5e00ffc / plugins/net.bioclipse.structuredb.tests/tests/net​/bioclipse/structuredb/domain/DBMoleculeTest.java : Test used for tracking down strange behavior - http://bit.ly/I0IfU
13:28 CIA-61 bioclipse.structuredb: jonalv FileStore * r463b318 / plugins/net.bioclipse.structuredb.tests/tests/n​et/bioclipse/structuredb/domain/LabelTest.java : Added atomcontainers for the test - http://bit.ly/bMXbn
13:28 CIA-61 bioclipse.structuredb: jonalv FileStore * r87d6c55 / plugins/net.bioclipse.structuredb/src/net/b​ioclipse/structuredb/domain/DBMolecule.java : Don't use SMILES in hasValuesEqualto - http://bit.ly/16A93s
13:28 Gpoks joined #bioclipse
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13:33 olass joined #bioclipse
13:43 CIA-61 bioclipse.structuredb: jonalv FileStore * re0fb19a / plugins/net.bioclipse.structuredb/src/net/bioclip​se/structuredb/persistency/dao/DBMoleculeDao.java :
13:43 CIA-61 bioclipse.structuredb: Removed cache. It was not so easy to make it work.
13:43 CIA-61 bioclipse.structuredb: Removed DAO level caching of number of molecules with a certain annotation. It was too complicated to get it to work... - http://bit.ly/JSlxq
14:23 CIA-61 bioclipse.core: jonalv master * r2a261f1 / plugins/net.bioclipse.data​bases/META-INF/MANIFEST.MF :
14:23 CIA-61 bioclipse.core: removed version spec on req. bundle in MANIFEST.MF
14:23 CIA-61 bioclipse.core: No version specified for org.eclipse.ui.navigator any longer. Fixes bug: #1543 - http://bit.ly/2sRVBU
14:23 zarah bug #1543 | http://tinyurl.com/mdfk9o
14:23 samuell Suggestion: Link to the "Plugins" page ( http://wiki.bioclipse.net/index.php?title=Plugins ) in the main menu of the wiki as well as on bioclipse.net. Took me a while to find it...
14:23 zarah samuell's link is also http://tinyurl.com/alwvxm
14:24 egonw samuell: please file that as a bug report at bugs.bioclipse.net
14:24 egonw and mark as wishlist
14:24 samuell egonw: Ok!
14:32 samuell egonw: I don't find "wishlist", Should it be in "severity"? There the closest thing I find is "enhancement"
14:33 egonw yes, that's the one :)
14:33 egonw sorry abou thtat
14:33 samuell egonw: Ok
14:33 samuell no prob
14:34 samuell commited.
14:40 olass samuell++
14:40 edrin hi olass
14:40 olass hi edrin
14:40 egonw @karma samuell
14:40 zarah samuell has a karma of 1
14:40 egonw well, it's a good start
14:41 egonw better than negative at least :)
14:41 egonw @karma c++
14:41 zarah c++ has a karma of -3
14:42 samuell :)
14:43 olass karma olas
14:43 zarah olas has a karma of 51
14:43 masak (c++)--
14:43 olass karma olass
14:43 zarah olass has a karma of 88
14:43 olass :(
14:43 olass samuell: let me tell you a story...
14:43 masak olass--
14:44 olass masak: what?
14:44 masak olass: don't you start.
14:44 olass samuell: you see, I didnät even have to tell it!
14:44 olass I think you get the message
14:44 masak samuell: he's just a grumpy old man.
14:44 olass samuell: teh karma system is tainted
14:44 olass and biased
14:44 olass and sometimes very cruel to nic epeople
14:44 masak it's protected from cheaters like olass.
14:45 olass masak-- //you have no proof whatsoever
14:45 egonw olass-- (for not doing something productive for bioclipse)
14:45 jonalv egonw++
14:45 masak egonw: thank you.
14:45 masak egonw++
14:45 olass egonw++ //thanks for reminding me
14:45 olass @thank egonw
14:45 zarah egonw: olass says thank you
14:45 masak zarah: you're a smart girl.
14:45 zarah masak: Never mind the compliment! Take your hand off my knee!
14:46 masak erm.
14:46 olass zarah: you are the nice one
14:46 zarah olass: no, YOU are the nice one! :)
14:46 * olass pets zarah
14:46 olass @poke zarah
14:48 samuell Ok, b2b (back 2 business): In fact, I'm trying to figure out how to install plugins as well... Suppose it is something that's obvious for Eclipse ppl, but since I'm just a wannabe...
14:50 samuell Should I just download from github, or can I add an eclipse site somehow?
14:52 masak samuell: if you want to make commits, download from github.
14:52 samuell masak: Ok!
14:54 samuell good point.
14:55 masak with git, I mean.
14:56 samuell masak: Yeah
15:11 Rijnbeek joined #bioclipse
15:11 samuell Ok, now succeded importing a plugin using egit.
15:12 samuell Though, IF I would have wanted to install from an eclipse software site, would I have been able to do so, and what is the URL of it?
15:12 egonw hi Rijnbeek!
15:12 egonw depends on what you want to install...
15:12 egonw the SDK?
15:13 samuell I installed the rdf plugin, for example...
15:14 egonw in eclipse ?
15:14 samuell Yeah
15:17 samuell ( BTW, the bioclipse SDK I successfully installed earlier today, from the software site that you set up )
15:18 samuell Just thinking whether other plugins are available for installation via an eclipse software site as well.
15:26 egonw joined #bioclipse
16:25 CIA-61 bioclipse.structuredb: jonalv master * r1fee81f / plugins/net.bioclipse.struc​turedb/META-INF/MANIFEST.MF : removed version on required plugins in MANIFEST.MF - http://bit.ly/1g1B4D
16:25 CIA-61 bioclipse.structuredb: jonalv master * ra0b0d64 / (2 files in 2 dirs):
16:25 CIA-61 bioclipse.structuredb: Made FileStore scale better
16:25 CIA-61 bioclipse.structuredb: It now uses 8 levels of directories - http://bit.ly/EubP6
16:25 CIA-61 bioclipse.structuredb: jonalv master * red083e1 / (4 files in 2 dirs):
16:25 CIA-61 bioclipse.structuredb: Deleting molecules should remove the cml files.
16:25 CIA-61 bioclipse.structuredb: Also important when dropping entire database. (This quick and dirty hack loads the entire molecule before deleting it -- very slow, no need to load the entire molecule for that...) - http://bit.ly/EaSIP

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