Camelia, the Perl 6 bug

IRC log for #bioclipse, 2009-09-15

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All times shown according to UTC.

Time Nick Message
06:33 Gpox joined #bioclipse
07:28 jonalv joined #bioclipse
07:38 samuell joined #bioclipse
07:47 samuell For you Java experts here: Can you see any potential problem with my setting of the java.library.path setting from commandline here: http://saml.rilspace.com/content/pr​oblems-getting-dr-prolog-up-running ?
07:47 zarah samuell's link is also http://tinyurl.com/qss6bc
07:47 samuell (Using Ubuntu 9.04)
08:24 olass joined #bioclipse
08:30 masak joined #bioclipse
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09:25 stain samuell: have you tried setting -Djava.library.path=~/install/xsb-comp​iler/XSB/config/i686-pc-linux-gnu/bin/  on your java command line?
09:25 stain oh I see it above now
09:25 stain perhaps you will need LD_LIBRARY_PATH as well
09:25 egonw I did not see any .so files on his machine
09:25 stain what does the files in xsb/ link to ?
09:27 shk3 joined #bioclipse
09:29 samuell stain: xsb (in /home/samuel/install/xsb-compiler/​XSB/config/i686-pc-linux-gnu/bin) is a binary file
09:29 stain samuell: what is 'a binary file' ?
09:31 samuell Well, I mean, it's an executable file, in binary format
09:32 stain tell me the filename
09:32 samuell In any case it's not a directory
09:32 stain you can't link to executables
09:32 stain you can only link in .so's
09:32 samuell Hmm... ok, seems like a point.
09:32 samuell Strange that they tell to do so in the instructions... ( http://fraoula.csd.uoc.gr:​6570/drprolog/INSTALL.txt ) but you seem to have a point there.
09:32 zarah samuell's link is also http://tinyurl.com/nz28df
09:34 samuell Will check that up. Thanks!
10:14 edrin joined #bioclipse
10:32 edrin hi
10:32 zarah saluton edrin
10:41 egonw hi edrin
10:41 edrin hi egonw
10:49 sneumann__ joined #bioclipse
11:33 CIA-52 bioclipse: carl_masak * r11728 /bot/trunk/zarah.pl:
11:33 CIA-52 bioclipse: [zarah.pl] fixed copy-paste error
11:33 CIA-52 bioclipse: s/unplan/replan/ in the replan sub
11:56 jonalv Gah I think I hate his new Eclipse version
12:11 samuell stain: I finally figured out how to compile XSB Prolog to create a .so file (libxsb.so). I had to go ./makexsb dynmodule . Again, thanks for helping!
12:17 egonw samuell++
12:33 olass jonalv: +1
12:33 olass it's so slow
12:34 egonw I did not see any problems on linux
12:34 egonw it actually seems somewhat faster
12:36 olass We are using the first cocoa version on Mac
12:36 olass it's not so strange we ar eexperiencing some bugs..
12:41 jonalv it\s so slow that it is driving me crazy
13:02 samuell joined #bioclipse
13:18 stain samuell: once uppon a time, as a young student and doing my first Java project, I wrote a Prolog interpreter for Java
13:18 stain it didn't actually work.. but it was fun :)
13:18 stain kind of 'How to do object orientation the wrong way'
13:32 CIA-52 bioclipse.core: jonalv master * r40471a1 / (4 files in 2 dirs): A few tests for ExtendedBioclipseJob behavior - http://bit.ly/wXII2
13:32 CIA-52 bioclipse.core: jonalv master * rb507376 / (6 files in 2 dirs):
13:32 CIA-52 bioclipse.core: Updated ExtendedBioclipseJob tests and fullfilled.
13:32 CIA-52 bioclipse.core: Ignore the JavaScript tests for now. It's a bit unclear exactly how it should work. Once that is decided the tests can be used. - http://bit.ly/15W66s
13:57 CIA-52 bioclipse.core: Ola Spjuth master * rb127a06 / (2 files in 2 dirs):
13:57 CIA-52 bioclipse.core: Added a FileUtil class for working with files in Bioclipse.
13:57 CIA-52 bioclipse.core: Currently consists of a Linked Project and methods to get IFile from an absolute file path by linking into this (hidden) project. - http://bit.ly/yjzU0
13:59 CIA-52 bioclipse.ds: Ola Spjuth master * r24c0865 / plugins/net.bioclipse.ds/src/net/bi​oclipse/ds/impl/BaseSDFMatcher.java : Updated to use LinkedProject instead of Virtual in Workspace to get IFile for parsing SDFile. - http://bit.ly/3FslsJ
14:11 CIA-52 bioclipse.ds: Ola Spjuth master * r7aa8a59 / (2 files in 2 dirs):
14:11 CIA-52 bioclipse.ds: Use new ExtendedBioclipseJob.
14:11 CIA-52 bioclipse.ds: Also explicitly call schedule upon invocation. - http://bit.ly/pNzKx
14:41 olass egonw: ping
14:42 olass I am lloking at your commit in cdk 2.0.x: Revert "Force compare int with int, instead of relying on autoboxing"
14:42 olass why did you revert it?
14:42 olass seems reasonable to me..
14:51 samuell olass: git branch -a will show the list of remote branches stored locally, if that can help
14:55 olass samuell: thx but this prob is starnger
14:56 olass seems liek something is cached somewhere
14:57 samuell olass: Ok... somebody hinted about the (dangerous) git reset --hard command for such situation.
14:58 olass sounds scary..
14:58 samuell But, no guarantees on that one!
14:58 samuell yeah
15:02 samuell Well, It might even do the opposite thing from what you want; resetting to the last committed state...
15:02 samuell So never mind.
15:03 * samuell has to go downtown
16:32 edrin left #bioclipse
18:08 egonw joined #bioclipse

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