Camelia, the Perl 6 bug

IRC log for #bioclipse, 2009-10-11

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All times shown according to UTC.

Time Nick Message
08:07 egonw joined #bioclipse
08:35 olass joined #bioclipse
09:02 egonw moin olass
09:02 olass moin
09:02 zarah hello olass, you fantastic person you
09:18 egonw writing 8 pages of article
09:44 egonw_ joined #bioclipse
12:40 egonw olass: http://www.myexperiment.org/workflows/927
12:40 zarah egonw's link is also http://tinyurl.com/yzdpr7l
12:40 olass cool
12:40 olass I have started a Taverna plugin for Bioclipse
12:40 olass met with Carol Goble at Bio-IT
12:40 egonw ah, great
12:40 egonw cool
12:40 olass and talked to stain friday
12:40 egonw I have not met her yet
12:41 olass so it's in the pipe
12:41 olass will push as soon as I have something that compiles
12:41 egonw I have sent my signed contributor agreement to the Taverna team
12:41 egonw for better integration of the XMPP plugin
12:41 olass sounds good
12:41 egonw and at some point, full inclusion in the main distrib, I' maiming for
12:41 olass excellent
12:42 egonw yes, plugin could simply run the workflow on a taverna server
12:42 egonw would fit in perfectly with the SOA of Bioclipse
12:42 olass yup
12:42 egonw and /me is so happy with Samuel
12:42 olass that is the first I am aiming for
12:42 egonw so far, at least :)
12:42 olass ok, gotta run
12:43 egonw ok, got to back to work too
12:43 egonw bye
12:43 olass se you tomorrow
12:43 olass bye
13:34 stain egonw: what is the difference between a wave and a wavelet..?
13:34 egonw a wave is the whole thing
13:35 egonw a wavelet is one of those boxes
13:35 egonw then there are blibs too...
13:35 egonw which are part of wavelets
13:35 stain so what are the blips..
13:35 egonw IIRC
13:35 egonw more like contributions to a wavelet, I think
13:36 stain I made my bot respond to my document changes, but there was mr. panda@a.gwave.com changing te bots own messages making loops, and ten I realized that ofcourse the bot receives every character I write :)
13:36 stain so every little change in a way is a blip then
13:36 egonw yes, possibly
13:36 egonw I reply to blibs right now...
13:37 egonw but I think you can 'wait' for the Done button to be pressed too...
13:37 stain but how do you avoid repying for every character typed?
13:37 stain ah, you don't.. but you only reply when you see the magic string, right
13:38 egonw right
13:38 egonw which is why so many robots use delimiters for begining and end
13:41 Gpox joined #bioclipse
13:46 egonw hej Gpox!
13:54 stain EventType.BLIP_SUBMITTED - but of course it would be more fun if 'Done' is not needed.. but as you say then you would need some other delimitter (like enter?)
14:01 egonw space perhaps...
14:01 egonw that's what I am using right now
14:09 stain :)
14:09 stain if I'll do it like the dummy wave I can detect te attachment right away, but probably wait for 'done' on the input parameters
14:09 stain a more clever one could probably have some form-like things
14:10 stain well - time for te pub.. but this was fun :)
14:30 egonw :)
15:03 olass joined #bioclipse
15:03 olass *phew*
15:11 olass egonw: ping
15:11 egonw pong
15:11 olass egonw: Have you done a myXP plugin yet? Else I will set it up in the bioclipse.taverna git repo
15:12 egonw myXP ?
15:12 * olass is bored proofreading and will code Taverna plugin for an hour
15:12 egonw ah
15:12 egonw yes
15:12 olass myExperiment
15:12 egonw I did
15:12 olass where?
15:12 egonw it's in bioclipse.rdf
15:12 olass does it work like gist?
15:12 olass why there?
15:13 olass rdf is an enabling technology, myEXP is not
15:13 olass should not bioclipse.social be a better place?
15:13 olass whatever
15:13 olass then I know you have done it
15:13 olass what is the status? Working?
15:15 egonw yes, it's working...
15:17 egonw mom
15:18 egonw http://chem-bla-ics.blogspot.com/2009/08​/bioclipse-and-sparql-end-points-2.html
15:18 zarah egonw's link is also http://tinyurl.com/yzcjayb
15:20 egonw currently only downloading a workflow implemented as manager:
15:20 egonw cdk.downloadWorkflow()
15:21 olass soundsgood
15:21 egonw no search implemented yet, but not too difficult
15:21 olass consider this an REF :)
15:21 olass RFE
15:21 olass will file you a bug
15:23 olass but I still do not think rdf feature is the way
15:23 olass it does not sem appropriate
15:23 olass not for the manager
15:24 egonw it's not actually in the rdf feature
15:24 egonw just in the bioclipse.rdf repos
15:25 egonw oh, it is...
15:25 olass ok, filed you a bug about this too
15:25 olass :)
15:25 egonw good
15:25 egonw thanx
15:25 egonw I'm glad you are over your hesitations to have many features :)
15:37 egonw btw: http://friendfeed.com/egonw/229dc5b7/​molecules-in-dbpedia-visualized-with
15:37 zarah egonw's link is also http://tinyurl.com/ykx22b4
15:50 olass egonw: you have any experience with jaxb?
15:52 egonw only a bit, and that was negative
16:40 olass joined #bioclipse
16:50 olass joined #bioclipse
17:15 edrin joined #bioclipse
17:23 edrin hi
17:23 zarah hi edrin
17:44 egonw hi edrin
17:55 edrin hi egonw
18:25 edrin left #bioclipse

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