| Time |
S |
Nick |
Message |
| 08:07 |
|
|
egonw joined #bioclipse |
| 08:35 |
|
|
olass joined #bioclipse |
| 09:02 |
|
egonw |
moin olass |
| 09:02 |
|
olass |
moin |
| 09:02 |
|
zarah |
hello olass, you fantastic person you |
| 09:18 |
|
egonw |
writing 8 pages of article |
| 09:44 |
|
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egonw_ joined #bioclipse |
| 12:40 |
|
egonw |
olass: http://www.myexperiment.org/workflows/927 |
| 12:40 |
|
zarah |
egonw's link is also http://tinyurl.com/yzdpr7l |
| 12:40 |
|
olass |
cool |
| 12:40 |
|
olass |
I have started a Taverna plugin for Bioclipse |
| 12:40 |
|
olass |
met with Carol Goble at Bio-IT |
| 12:40 |
|
egonw |
ah, great |
| 12:40 |
|
egonw |
cool |
| 12:40 |
|
olass |
and talked to stain friday |
| 12:40 |
|
egonw |
I have not met her yet |
| 12:41 |
|
olass |
so it's in the pipe |
| 12:41 |
|
olass |
will push as soon as I have something that compiles |
| 12:41 |
|
egonw |
I have sent my signed contributor agreement to the Taverna team |
| 12:41 |
|
egonw |
for better integration of the XMPP plugin |
| 12:41 |
|
olass |
sounds good |
| 12:41 |
|
egonw |
and at some point, full inclusion in the main distrib, I' maiming for |
| 12:41 |
|
olass |
excellent |
| 12:42 |
|
egonw |
yes, plugin could simply run the workflow on a taverna server |
| 12:42 |
|
egonw |
would fit in perfectly with the SOA of Bioclipse |
| 12:42 |
|
olass |
yup |
| 12:42 |
|
egonw |
and /me is so happy with Samuel |
| 12:42 |
|
olass |
that is the first I am aiming for |
| 12:42 |
|
egonw |
so far, at least :) |
| 12:42 |
|
olass |
ok, gotta run |
| 12:43 |
|
egonw |
ok, got to back to work too |
| 12:43 |
|
egonw |
bye |
| 12:43 |
|
olass |
se you tomorrow |
| 12:43 |
|
olass |
bye |
| 13:34 |
|
stain |
egonw: what is the difference between a wave and a wavelet..? |
| 13:34 |
|
egonw |
a wave is the whole thing |
| 13:35 |
|
egonw |
a wavelet is one of those boxes |
| 13:35 |
|
egonw |
then there are blibs too... |
| 13:35 |
|
egonw |
which are part of wavelets |
| 13:35 |
|
stain |
so what are the blips.. |
| 13:35 |
|
egonw |
IIRC |
| 13:35 |
|
egonw |
more like contributions to a wavelet, I think |
| 13:36 |
|
stain |
I made my bot respond to my document changes, but there was mr. panda a.gwave.com changing te bots own messages making loops, and ten I realized that ofcourse the bot receives every character I write :) |
| 13:36 |
|
stain |
so every little change in a way is a blip then |
| 13:36 |
|
egonw |
yes, possibly |
| 13:36 |
|
egonw |
I reply to blibs right now... |
| 13:37 |
|
egonw |
but I think you can 'wait' for the Done button to be pressed too... |
| 13:37 |
|
stain |
but how do you avoid repying for every character typed? |
| 13:37 |
|
stain |
ah, you don't.. but you only reply when you see the magic string, right |
| 13:38 |
|
egonw |
right |
| 13:38 |
|
egonw |
which is why so many robots use delimiters for begining and end |
| 13:41 |
|
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Gpox joined #bioclipse |
| 13:46 |
|
egonw |
hej Gpox! |
| 13:54 |
|
stain |
EventType.BLIP_SUBMITTED - but of course it would be more fun if 'Done' is not needed.. but as you say then you would need some other delimitter (like enter?) |
| 14:01 |
|
egonw |
space perhaps... |
| 14:01 |
|
egonw |
that's what I am using right now |
| 14:09 |
|
stain |
:) |
| 14:09 |
|
stain |
if I'll do it like the dummy wave I can detect te attachment right away, but probably wait for 'done' on the input parameters |
| 14:09 |
|
stain |
a more clever one could probably have some form-like things |
| 14:10 |
|
stain |
well - time for te pub.. but this was fun :) |
| 14:30 |
|
egonw |
:) |
| 15:03 |
|
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olass joined #bioclipse |
| 15:03 |
|
olass |
*phew* |
| 15:11 |
|
olass |
egonw: ping |
| 15:11 |
|
egonw |
pong |
| 15:11 |
|
olass |
egonw: Have you done a myXP plugin yet? Else I will set it up in the bioclipse.taverna git repo |
| 15:12 |
|
egonw |
myXP ? |
| 15:12 |
|
* olass |
is bored proofreading and will code Taverna plugin for an hour |
| 15:12 |
|
egonw |
ah |
| 15:12 |
|
egonw |
yes |
| 15:12 |
|
olass |
myExperiment |
| 15:12 |
|
egonw |
I did |
| 15:12 |
|
olass |
where? |
| 15:12 |
|
egonw |
it's in bioclipse.rdf |
| 15:12 |
|
olass |
does it work like gist? |
| 15:12 |
|
olass |
why there? |
| 15:13 |
|
olass |
rdf is an enabling technology, myEXP is not |
| 15:13 |
|
olass |
should not bioclipse.social be a better place? |
| 15:13 |
|
olass |
whatever |
| 15:13 |
|
olass |
then I know you have done it |
| 15:13 |
|
olass |
what is the status? Working? |
| 15:15 |
|
egonw |
yes, it's working... |
| 15:17 |
|
egonw |
mom |
| 15:18 |
|
egonw |
http://chem-bla-ics.blogspot.c[…]end-points-2.html |
| 15:18 |
|
zarah |
egonw's link is also http://tinyurl.com/yzcjayb |
| 15:20 |
|
egonw |
currently only downloading a workflow implemented as manager: |
| 15:20 |
|
egonw |
cdk.downloadWorkflow() |
| 15:21 |
|
olass |
soundsgood |
| 15:21 |
|
egonw |
no search implemented yet, but not too difficult |
| 15:21 |
|
olass |
consider this an REF :) |
| 15:21 |
|
olass |
RFE |
| 15:21 |
|
olass |
will file you a bug |
| 15:23 |
|
olass |
but I still do not think rdf feature is the way |
| 15:23 |
|
olass |
it does not sem appropriate |
| 15:23 |
|
olass |
not for the manager |
| 15:24 |
|
egonw |
it's not actually in the rdf feature |
| 15:24 |
|
egonw |
just in the bioclipse.rdf repos |
| 15:25 |
|
egonw |
oh, it is... |
| 15:25 |
|
olass |
ok, filed you a bug about this too |
| 15:25 |
|
olass |
:) |
| 15:25 |
|
egonw |
good |
| 15:25 |
|
egonw |
thanx |
| 15:25 |
|
egonw |
I'm glad you are over your hesitations to have many features :) |
| 15:37 |
|
egonw |
btw: http://friendfeed.com/egonw/22[…]a-visualized-with |
| 15:37 |
|
zarah |
egonw's link is also http://tinyurl.com/ykx22b4 |
| 15:50 |
|
olass |
egonw: you have any experience with jaxb? |
| 15:52 |
|
egonw |
only a bit, and that was negative |
| 16:40 |
|
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olass joined #bioclipse |
| 16:50 |
|
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olass joined #bioclipse |
| 17:15 |
|
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edrin joined #bioclipse |
| 17:23 |
|
edrin |
hi |
| 17:23 |
|
zarah |
hi edrin |
| 17:44 |
|
egonw |
hi edrin |
| 17:55 |
|
edrin |
hi egonw |
| 18:25 |
|
|
edrin left #bioclipse |
