Camelia, the Perl 6 bug

IRC log for #bioclipse, 2009-10-12

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All times shown according to UTC.

Time Nick Message
04:29 masak joined #bioclipse
06:32 olass joined #bioclipse
07:03 egonw joined #bioclipse
07:34 egonw moin
07:34 zarah hello egonw, you fantastic person you
07:34 masak o/
08:11 jonalv joined #bioclipse
08:15 egonw hej jonalv
08:15 egonw jonalv: I will be at BMC tomorrow, but likely not Wednesday
08:15 egonw but we can continue Wed via RIC
08:15 jonalv moin egonw
08:16 jonalv egonw: oki
08:16 jonalv egonw: thre were somthing about a car right?
08:16 egonw olass: are you tomorrow at BMC? can we chat about wrapping up the QSAR paper?
08:16 olass no, not tomorrow
08:16 egonw right
08:16 egonw your Wed deadline
08:16 olass friday earliest
08:16 olass thursday deadline
08:16 egonw just remembered that
08:16 egonw sure
08:16 egonw good :)
08:17 egonw jonalv: yes
08:18 edrin joined #bioclipse
08:19 edrin hi
08:19 zarah oh hai edrin
08:19 edrin good morning
08:26 masak good morning
08:27 jonalv good morning
08:27 zarah good morning
08:41 egonw olass: what's the full cite for the submitted Bioclipse2 paper?
08:41 olass mom
08:42 edrin are there any news about the bioc2 paper?
08:43 olass nope
08:43 olass "under review"
08:43 jonalv and what's the status on that_
08:43 jonalv oh hehe I am too late toady :)
08:43 edrin ok :[
09:13 sneumann joined #bioclipse
10:16 samuell joined #bioclipse
10:28 egonw hi samuell
10:29 samuell egonw: Hello
10:29 samuell And hello vrybody
11:16 masak o/
11:59 egonw [bioclipse/cdk]-rdf paper sent around... comments welcome, but please do not feel obligated at all
12:01 egonw mmm... looking at it... I am pretty pleased with the current state of it
12:02 edrin where will you send it?
12:11 egonw conference proceedings series
12:12 egonw but it will also result in a bmc bioinformatics paper later
12:19 egonw bbl
12:57 * samuell goes for "lunch". Back ~16
13:14 dsurdyk joined #bioclipse
13:29 dsurdyk joined #bioclipse
14:20 samuell joined #bioclipse
14:58 samuell joined #bioclipse
15:14 edrin hey olass
15:14 olass *umpf*
15:21 samuell joined #bioclipse
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15:49 dsurdyk joined #bioclipse
15:49 dsurdyk hey all - what is the bioinformatics plugin name?
15:50 dsurdyk i.e. where in the source repo does the sequence analyzer reside?
16:02 jonalv dsurdyk: should probably ask masak that. masak?
16:02 dsurdyk yea i'll email him tonight
16:02 masak dsurdyk: oh hai
16:02 dsurdyk thanks
16:03 dsurdyk ah there you are - hi
16:03 masak dsurdyk: so,
16:03 dsurdyk so I'm looking to tie the phylip into your seq. analyzer
16:03 masak dsurdyk: the repo is called bioclipse.bioinformatics
16:03 masak by 'seq. analyzer', do you mean the graphical editor?
16:03 dsurdyk uhh - not sure
16:04 masak that one sits in a plugin called net.bioclipse.biojava.ui
16:04 dsurdyk well what folder is that under
16:04 dsurdyk i'm in trunk/plugins
16:10 samuell joined #bioclipse
16:12 jonalv dsurdyk: http://github.com/masak/bioclipse.bioinforma​tics/tree/master/plugins/net.bioclipse.bioja​va.ui/src/net/bioclipse/biojava/ui/editors/
16:12 zarah jonalv's link is also http://tinyurl.com/ygkgava
16:13 dsurdyk yea - i was using the old sourceforge repo
16:13 dsurdyk thanks all for helping me get started!
16:16 dsurdyk left #bioclipse
16:17 * jonalv gives up for today, cya
16:20 miguelrojasch joined #bioclipse
16:20 samuell jonalv: cu
16:20 * samuell realizes his message was too late
16:22 miguelrojasch left #bioclipse
16:22 miguelrojasch joined #bioclipse
16:50 egonw joined #bioclipse
16:50 samuell joined #bioclipse
16:51 edrin left #bioclipse
18:56 samuell Was it so that one had to execute bioclipse from another file than the standard bioclipse.product in order to get a new plugin included?
18:56 samuell (Trying to get my new blipkit plugin to respond to the JS console...)
18:57 samuell (I managed to get it working last time, with DR-PROLOG, but not sure what was the missing step)
19:07 sneumann joined #bioclipse
19:18 samuell Well, I found out that it's the feature and product files that are still missing (they are not created by the Bioclipse SDK)
19:19 samuell Will see if I can create them based on the ones that Egon created last time for the DR-PROLOG plugin ( http://github.com/egonw/bioclipse.drprolog/co​mmit/824ec442cd84fb82593a56ccc3e443c357803314 )
19:19 zarah samuell's link is also http://tinyurl.com/ygnhzgd
19:21 egonw samuell: check the features/ folder...
19:21 egonw more tomorrow...
19:21 egonw got that paper to finish first tonite
19:22 egonw a feature defines a list of plugins
19:22 egonw and you add a feature to the .product
19:22 egonw and you copy that file, just so that your bioclipse.product is unmodified and does not get accidentally commited to the repos
19:27 samuell Yep, looking more at this tomorrow. No worries.
21:36 miguelrojasch left #bioclipse

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