Camelia, the Perl 6 bug

IRC log for #bioclipse, 2009-10-20

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All times shown according to UTC.

Time Nick Message
05:45 egonw joined #bioclipse
06:42 Gpox joined #bioclipse
07:02 masak joined #bioclipse
07:34 sneumann_ joined #bioclipse
07:49 egonw joined #bioclipse
07:50 olass joined #bioclipse
07:51 olass moin
07:51 zarah oh hai olass
07:51 olass hola
07:51 zarah hello olass, you fantastic person you
07:53 egonw hi olass
07:53 egonw at BMC?
07:53 olass hi egonw
07:53 olass no
07:53 egonw ack
07:53 olass will be at BMC on thursday
07:53 jonalv joined #bioclipse
07:53 egonw Thu I guess?
07:53 egonw ah :)
07:53 egonw hi jonalv
08:11 jonalv hi egonw
08:31 samuell joined #bioclipse
08:38 jonalv egonw, samuell (and anyone else who happends to be in Uppsala): Sushi?
08:38 egonw nej, jag har boxet(?)
08:38 samuell jonalv: For me, yes, that'd be nice
08:39 masak egonw: 'låda'
08:39 samuell (I didn't have time to make a box :( )
08:39 masak ok, that makes 4 of us.
08:39 egonw ah, like the car :)
08:39 jonalv egonw: "låda"
08:39 egonw ah, like the car :)
08:39 masak egonw: no, this is with an å.
08:39 egonw bla... details
08:40 masak that's a completely different letter!
08:40 jonalv and sound
08:40 masak like alpha and omega.
08:40 egonw alpha and åmega?
08:40 masak actually, very much like that. :)
08:40 jonalv +1
08:40 egonw ok, guyes
08:40 egonw guys
08:41 egonw stop the fun
08:41 masak fun.stop()
08:41 egonw we have Bioclipse-Docking to implement
08:41 masak :P
08:41 egonw (and other stuff)
08:42 jonalv egonw: I canät run tests again, I think I need your influence on my computer
08:42 jonalv I think I have done everything...
08:43 olass How about this afiliation? National Center for Biotechnology Information, National Library of Medicine, National Institutes of
08:43 olass Health
08:43 olass a lot of "national" in that organization...
08:44 olass we should start the National Institute of Bioclipse
08:44 egonw yes, in USA patriotic as actually a positive attribute
08:44 egonw the NIB
08:44 egonw I like that
08:44 olass we just need 100M funding first
08:45 egonw let's bring that up in the next IBA meeting :)
08:45 * jonalv fears that national might actually meran something
08:45 olass meran?
08:45 olass sounds foreign
08:46 jonalv egonw: can you help me?
08:46 * jonalv can't run plugin tests
08:46 jonalv I guess I could just commit and forget...
08:54 CIA-51 bioclipse.core: jonalv master * rdeddc5e / plugins/net.bioclipse.core/src/net/bioclipse/manag​ers/business/AbstractManagerMethodDispatcher.java :
08:54 CIA-51 bioclipse.core: Test using isAssignableFrom instead of by class
08:54 CIA-51 bioclipse.core: This will handle ExtendedBioclipseJob too. I can not run tests on my machine but this should-be-safe™. Fixes bug: #1659 - http://bit.ly/21lOK3
08:54 zarah bug #1659 | http://tinyurl.com/yjlx3a2
09:05 sneumann joined #bioclipse
09:09 ilbot2 joined #bioclipse
09:09 Topic for #bioclipseis now An open source workbench for chem- and bioinformatics - http://www.bioclipse.net/ | BioclipseWiki => http://wiki.bioclipse.net/ !! | logs => http://colabti.org/irclogge​r/irclogger_logs/bioclipse & http://moritz.faui2k3.org/irc​log/out.pl?channel=bioclipse || Bioclipse2 beta released! See http://bioclipse.blogspot.com/ || http://www.youtube.com/watch?v=ZUBQknWUEYU
09:15 shk3 joined #bioclipse
09:32 egonw Gpox: your commits are now pushed to bioclipse.cheminformatics
09:40 samuell Any current plugins that take a path to a file in the filesystem as parameter?
09:41 miguelrojasch joined #bioclipse
09:41 samuell I get "Path must include project and resource
09:41 samuell name: /test.pl"
09:41 samuell But I want to specify a "normal" filepath
09:41 samuell (The above message I get from using IFile)
09:44 samuell Ok, I'll try accessing the file from one of the projects in the eclipse workspace instead.
10:43 olass samuell: you can try FileUil.createLinkedFile(...) in net.bioclipse.core if you need to link in an absolute file in the workspace
10:43 olass FileUtil
10:43 olass hmm, net.bioclipse.core.util.FileUtil
11:21 markr joined #bioclipse
11:35 olass egonw: ping
11:38 olass egonw: do you apply patches in 2.2.x in master as well?
11:42 egonw olass: no, have not merged them in yet
11:42 egonw but will do
11:42 olass ok
11:42 olass egonw: how do I fetch the new branch?
11:42 egonw git fetch origin
11:42 egonw or
11:42 egonw git fetch github
11:43 egonw whatever the nick for the remote repos is
11:43 egonw then you'll see the branch with:
11:43 egonw git branch -r
11:43 olass nope
11:43 egonw and you can make a local checkout then with:
11:43 egonw git checkout -b 2.2.x origin/2.2.x
11:43 olass git fetch origin does not make the 2.2.x show up with git branch -r
11:44 egonw you'll have to use the nick for my repos
11:44 olass hmm
11:44 olass ah
11:44 olass stupid me
11:44 Gpox git remote -v
11:45 olass ok, thx
11:45 olass I am on track
11:45 egonw Gpox++ (did not know that one... much faster than inspecting .git/config :)
11:46 egonw markr: this is a good reason for listening on IRC... you get to learn more insights about git
11:46 egonw just I do too
11:46 olass egonw: how do I push a new branch?
11:46 egonw git push FOO newBranch
11:47 olass and FOO is ?
11:47 egonw dunno
11:47 egonw not origin
11:47 egonw oh, perhaps it is...
11:47 olass why not?
11:47 olass for core it is for me :)
11:47 egonw FOO is the nick of the remore repos you want to push too
11:47 olass ok
11:47 olass works
11:47 olass we now have 2.2.x on core repo
12:02 olass @pz @ola target:2.2
12:03 zarah [1210] Update sites prefs page hides ... http://tinyurl.com/yg2supz
12:03 zarah [1326] Fix serialization/deserializat... http://tinyurl.com/msm3ak
12:03 zarah [1334] Custom project name for contri... http://tinyurl.com/yjv6jeu
12:03 zarah [1563] Paste not working in Informati... http://tinyurl.com/ygrkudd
12:03 zarah [686] Set help context ID on parts       http://tinyurl.com/kskpu2
12:03 zarah Entire list (61) at http://tinyurl.com/yz42fks
12:03 olass nice
12:05 masak :)
12:05 masak zarah++
14:21 edrin joined #bioclipse
14:23 edrin hi
14:23 zarah ni hao edrin
14:33 masak ni hao edrin
14:49 samuell left #bioclipse
14:51 egonw joined #bioclipse
14:53 CIA-51 bioclipse.cheminformatics: Egon Willighagen 2.2.x * r8b1ceb2 / plugins/net.bioclipse.cdk.busi​ness.test/META-INF/MANIFEST.MF : Added missing dependency, which 3.5 started to have problems with, but 3.4 was OK with - http://bit.ly/7TIsC
14:53 CIA-51 bioclipse.cheminformatics: Egon Willighagen 2.2.x * rfc34f6e / (2 files): Added tests for all the plugins in this feature (at least, in the future; now only the CDK tests included) - http://bit.ly/4344se
14:53 CIA-51 bioclipse.cheminformatics: Egon Willighagen 2.2.x * r9121ca8 / (4 files): Fixed class names: PubChemTest, not InChITest - http://bit.ly/3WAhAe
14:53 CIA-51 bioclipse.cheminformatics: Egon Willighagen 2.2.x * r36c2614 / (3 files in 2 dirs): Added the PubChem test suites to the feature testing - http://bit.ly/2Od2Tr
15:38 CIA-51 bioclipse.cheminformatics: Egon Willighagen 2.2.x * rad21fdc / (3 files in 2 dirs): Added InChI- and ValidateCMLManager testing - http://bit.ly/3c6dKN
15:46 CIA-51 bioclipse.cheminformatics: Egon Willighagen 2.2.x * r52c927e / (2 files in 2 dirs): Added testing for the JChemPaint managers - http://bit.ly/22TV1v
16:45 jonalv -quit
17:30 edrin left #bioclipse

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