Camelia, the Perl 6 bug

IRC log for #bioclipse, 2009-10-28

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All times shown according to UTC.

Time Nick Message
06:29 sneumann joined #bioclipse
08:02 sneumann joined #bioclipse
08:07 Gpox joined #bioclipse
08:21 olass joined #bioclipse
08:21 olass moin
08:21 zarah privet olass
08:21 olass @seen egonw
08:21 zarah egonw was last seen 1 d 1 h 55 m 33 s ago in #bioclipse saying 'shit, wrong window'
08:22 olass :)
08:34 sneumann ROFL
08:54 edrin joined #bioclipse
09:53 edrin hi
09:53 zarah privet edrin
11:34 masak joined #bioclipse
11:45 olass @seen egonw
11:45 zarah egonw was last seen 1 d 5 h 19 m 38 s ago in #bioclipse saying 'shit, wrong window'
11:46 * olass thinks this is funny
11:47 masak it is :)
13:55 egonw joined #bioclipse
14:02 olass hi egonw
14:03 olass egonw: what cheminfo repo is for 2.2.x?
14:03 olass egonw: it seems 2.2.x in cheminfo repo has not the fixes in Gpox repo
14:03 olass could you merge that for RC1 release?
14:21 egonw Gpox: please email me what you want me to merge...
14:22 egonw olass: it's the jchempaint-primary, bioclipse-2.1.x branch on Pele
14:22 olass egonw: please merge to 2.2.x
14:22 olass that is what I will use for RC1
14:23 olass I have not been able to export since 2.2.x in cheminfo is not updated
14:23 olass and we must use 2.2.x
14:23 olass that is the point of the branch
14:23 egonw sorry, you lost me
14:23 olass ok
14:23 egonw why can't you export?
14:23 olass bioclipse.cheminfo repo branch 2.2.x
14:23 egonw and what makes you think 2.2.x branch is not updated?
14:24 olass that is what jonalv tells me
14:24 olass bugs are fixed in Gpox repo
14:24 olass which are not in 2.2.x on egons/cheminfo repo
14:24 egonw so, what fixes are you talking about?
14:24 olass that is what jonalv + Gpox tells me
14:24 olass no idea
14:24 olass that is what jonalv + Gpox tells me
14:24 egonw neither do I
14:25 olass could you merge please?
14:25 egonw I see a pull request from Gpox, and will merge that
14:25 olass to confirm all are in 2.2.x?
14:25 egonw but I can only guess that that is what you ask me to merge
14:25 olass sounds liek a plan..
14:25 egonw olass: please try to tell me *what* to merge next time
14:25 olass egonw: well, I assume you want as many bug fixes to JCP to be in RC1, right?
14:26 egonw I can merge whatever you like
14:26 egonw but only if I know what to merge
14:26 olass ?
14:26 egonw olass: it's like this
14:26 olass you are responsible for cheminfo repo, not me
14:26 egonw ola, can you get me that book from the library?
14:26 olass I donät know
14:26 egonw then you say something like: "what book"
14:26 egonw then I say
14:26 egonw no clue
14:26 egonw just get me that book
14:27 olass egonw: are you suggesting that you had no idea Gpox worked on JCP?
14:27 egonw I will now get a 'a' book
14:27 egonw I will now get 'a' book
14:27 egonw I hope you will like it
14:27 olass get all relevant books, yes
14:27 egonw sure
14:27 egonw quite so
14:27 egonw exactly what I mean
14:27 olass I don't know what's relevant
14:28 egonw right on!
14:28 egonw now you get it!
14:28 olass but you do
14:28 olass regarding cheminfo repo you do
14:28 olass I do for other repos
14:28 egonw not if you tell me to merge 'something'
14:28 olass ?
14:28 egonw I have no clue what 'something' is
14:29 egonw but neither do you
14:29 egonw so who cares
14:29 olass "Egon, could you please merge all relevant forks of cheminfo repo into 2.2.x that you would like to go in RC1"
14:29 olass a better question?
14:29 egonw no, equally good
14:30 olass git--
14:31 olass I now have no clue what cheminfo repo to export from
14:31 egonw olass-- (for blaming git for his own fuziness)
14:31 olass since different bugs are solved in different repos
14:32 olass egonw-- //for not having a single place where ola can export from
14:32 egonw olass-- (for not understanding he could simply fork and pull in arvid patches himself)
14:33 egonw olass-- (for not signing off the patches, and tell me which patches he actually wants to see merged)
14:34 egonw Gpox: please do add at least minimal JavaDoc to public methods
14:35 CIA-51 bioclipse.cheminformatics: Arvid Berg 2.2.x * rf938fe1 / (5 files in 3 dirs):
14:35 CIA-51 bioclipse.cheminformatics: Implementing drag from JCP-view
14:35 CIA-51 bioclipse.cheminformatics: Partial solving bug #1277 - http://bit.ly/3EWbLh
14:35 CIA-51 bioclipse.cheminformatics: Arvid Berg 2.2.x * r22280ba / plugins/net.bioclipse.cdk.ui.sdfed​itor/src/net/bioclipse/cdk/ui/sdfe​ditor/editor/MoleculesEditor.java : Updated drag & drop for molecules editor - http://bit.ly/3I1jv4
14:35 zarah bug #1277 | http://tinyurl.com/yk98zdv
14:35 CIA-51 bioclipse.cheminformatics: Arvid Berg 2.2.x * ra794fe4 / (2 files in 2 dirs):
14:35 CIA-51 bioclipse.cheminformatics: Moved getRecord to SDFileIndex
14:35 CIA-51 bioclipse.cheminformatics: That is where it belongs, handling the retrieval of bytes from the file using the position in the index - http://bit.ly/4jdq2O
14:35 CIA-51 bioclipse.cheminformatics: Arvid Berg 2.2.x * r575a2b9 / plugins/net.bioclipse.cdk.​smartsmatching/.classpath : Changed .classpath to not give error on OS X - http://bit.ly/1skT7x
14:49 Gpox joined #bioclipse
14:53 egonw Gpox: ping
14:53 Gpox egonw: pong
14:54 egonw Gpox: do you know what olas wanted me to merge?
14:54 egonw is that your branch of 2.2.x which you sent a pull request for?
14:54 Gpox yes
14:54 egonw ok, thanx
14:55 egonw samuell++ (for taking the opportunity to upgrade to semantic mediawiki)
16:23 jonalv joined #bioclipse
16:24 * jonalv has been in the channel bioclispe all the day but is here now... :/
16:24 jonalv ooops... :)
16:32 egonw hi jonalv
16:32 jonalv hi egonw, how are you?
16:32 egonw OK
16:32 egonw enjoyed 1.5 days in Sala
16:32 * jonalv has actually sepnt most of the day i nthe lab
16:32 jonalv oh, what did you do in there?
16:33 egonw celebrate birthday
16:33 jonalv egonw: have you had time to look at my groovy script?
16:33 egonw and visit silvermine
16:34 egonw no, not yet
16:35 jonalv ah, yea silvermines are always intresting
16:35 jonalv :)
16:38 egonw any mine is...
16:38 jonalv indeed
16:38 jonalv egonw: so, are you comming to UA any day this week?
16:38 egonw UA?
16:38 egonw will be at BMC part of tomorrow
16:39 jonalv Uppsala (I thought you were the one who introduced that one, but maybe it was olasss)
16:39 egonw in the morning visiting Samuel's mid-term presentation...
16:39 egonw what's the A for?
16:39 jonalv ah so you are going to be there?
16:39 jonalv UppsalA?
16:39 egonw ic...
16:39 jonalv we will have to ask olass
16:40 egonw :)
16:40 jonalv it sounds like something the swedish military could have come up with. They have crazy abbreviations?
16:40 masak yes.
16:40 masak they do.
16:41 jonalv sctarch the "?" I don't know where that came from
16:41 * jonalv is tired
16:41 * jonalv is drinking green tea in the hope it will make him less tired
16:42 jonalv egonw: I was thinkiing it might be time to get osme more done on that fingerprint stuff...
16:43 egonw jonalv: agreed
16:43 egonw that bloody cold ruined my full last week
16:43 egonw jonalv: let's talk next week
16:43 egonw did not manage to finish anything last week
16:43 egonw need to go for dinner now...
16:43 egonw hope to be back later today...
16:44 egonw though rather tired of the trip...
16:44 jonalv yea I ahve lab next week in tuesday, and wednedsday is Jarls birthday and thuseday i vaccination
16:44 egonw must be the age... 35 now :)
16:44 egonw jonalv: thanx for the reminded...
16:44 jonalv egonw: so maybe thursday? :)
16:44 egonw wednedsday ... ok
16:44 jonalv |thursday is vaccination
16:45 egonw indeed
16:45 egonw saw that
16:45 jonalv egonw: so you will be at bmc the whole next week... :)
16:45 egonw nope
16:45 jonalv well wednesday and thursdy at least
16:45 egonw well, yes, it seems close
16:45 egonw Tue-Dri
16:45 egonw Tue-Fri
16:46 egonw bugger
16:46 jonalv oh and friday is spikning
16:46 egonw that's too much
16:46 egonw spikning?
16:46 egonw what's that?
16:46 jonalv ola and martin
16:46 egonw another acrynym?
16:46 egonw que?
16:46 egonw spikning?
16:47 jonalv egonw: it's swedish tradition to have "nailing" when their theses are in print or soemthing like thath
16:47 egonw ah, ok
16:47 egonw there is also the eScience meeting in the afternoon
16:47 egonw busy week it will be :(
16:48 egonw thanx god I did not go to Goslar
16:48 egonw ok, gone now
16:48 egonw bye for now
16:48 egonw will try kabsch tonite
16:48 jonalv egonw: "kabsch"?
17:05 jonalv http://en.wikipedia.org/wiki/Kabsch_algorithm ah cool
17:05 zarah jonalv's link is also http://tinyurl.com/yjm4txp
17:53 egonw_ joined #bioclipse
18:22 edrin egonw: swine flu vaccination ?
18:22 egonw yes
18:22 edrin ok :)
18:23 edrin so ppl in .se want them :)
18:23 CIA-51 bioclipse.cheminformatics: Egon Willighagen 2.2.x * r9276f09 / (4 files in 4 dirs): Removed export package clauses, as the plugins have nothing in it yet (planned for 2.4) - http://bit.ly/3QTB5P
18:23 egonw no
18:23 edrin German media are highly skeptical
18:23 egonw the better for those who want
18:24 egonw have the come up with valid reasons yet?
18:24 edrin not really
18:24 egonw so, send a complaint against the german journalism office
18:24 edrin they were talking about some adjuvants being critical
18:24 egonw for really bad journalism
18:24 sneumann joined #bioclipse
18:25 edrin we had a lesson about the vaccination this morning
18:25 egonw some?
18:25 edrin some?
18:25 egonw and how many death because of the H1N1 flu so far
18:25 egonw ?
18:25 egonw how do the numbers compare?
18:26 egonw death rate of vaccination versus the real virus?
18:26 edrin television said 4 death in .se "due to" vaccination ;)
18:26 edrin actually they told us to get the vaccination
18:26 egonw have not heard that, but not reading the paper daily...
18:27 egonw how many in germany
18:27 edrin none i think
18:27 egonw yes, the risk of dying from the vaccin is simply very much smaller than dying from the flu itself
18:27 edrin ah, dont worry, its more likely that you get killed by a car accident on the way to the vaccination than by the vaccination itself i guess
18:28 egonw indeed
18:28 edrin the funny thing is...
18:28 egonw well, it adds up, I guess
18:28 egonw because I am pretty sure that death will be assigned to the vaccin too :)
18:29 egonw seriously... only at the end of the season we know the real numbers...
18:29 egonw but I think in USA, there are more death now in the winter season already, than normally in a whole season
18:29 egonw well, then I'm just being boring
18:29 egonw and taking the safer path
18:29 edrin they told us our hospital has 9000 employees, 2000 of the MDs. In Germany the government recommended vaccination of the medical staff. However our hospital ordered only 1000 vaccinations ;)
18:30 egonw oh, brilliant :)
18:32 edrin and: nobody wants to be responsible for organizing the vaccinations ! can you imagine? 2500 MDs and starting vaccination just fails because nobody "has time" to give the vaccinations ?
18:32 edrin really funny
18:32 egonw sad
18:33 edrin for example our institute it has a vaccination consultation-hour for medical staff...
18:33 edrin but we do not have the vaccination
18:34 edrin and if i got it right we wont get them
18:34 edrin chaos, hurray :)
18:34 edrin lets see the status of organization in 1 week
18:35 edrin maybe I am vaccinated then
18:35 edrin I need tetanus and normal flu, too
18:39 edrin egonw: I read your post about Knime got GPL... actually I tried Knime already and really looks good
18:39 edrin I am about to write a xmpp/xws4j plugin for it
18:39 egonw yes, bring on the competition
18:39 egonw stain: I'm sure the Taverna team learned about the news too... very possibly before the official announcement already...
18:43 egonw edrin: keep me informed
18:44 edrin sure
18:52 egonw edrin: did you look at the compile problem in net.bioclipse.jsexecution I reported about?
18:52 edrin no, since i still did not have time to check out everything
18:53 edrin egonw: it was working for others, right?
18:58 egonw I don't know
19:37 samuell joined #bioclipse
19:56 egonw hej samuell
19:57 samuell hej egon
19:57 egonw can you email me where I need to be, and how to get there from the BMC?
19:57 samuell It's at BMC I think...
19:57 samuell Will look up where
19:57 egonw thanx
20:01 samuell You should have it in a second...
20:02 egonw ok ,thanx
20:02 egonw going offline now
20:02 egonw good luck, and see you tomorrow!
20:02 samuell Yep
20:02 samuell Yes, CU. B7:101a, that might be in the corridor where the reception is, I think. I've seen people go there for degree project presentations before.
20:03 egonw ack
20:08 sneumann_ joined #bioclipse
22:25 edrin left #bioclipse

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