Camelia, the Perl 6 bug

IRC log for #bioclipse, 2009-11-05

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Time Nick Message
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08:05 olass moin
08:05 zarah oh hai olass
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08:44 jonalv saluton
08:44 jonalv @ping
08:44 zarah jonalv: pong
08:44 olass hi
08:45 zarah ni hao olass
08:45 * jonalv has inkscape installed now. Next thing on the list is Gimp
09:35 egonw_ joined #bioclipse
09:41 jonalv olass, egonw_: skype?
09:41 egonw_ not working yet
09:41 egonw_ mic is not working
09:42 jonalv kubuntu--
09:42 jonalv maybe you should have goten a mac?
09:43 egonw_ please be accurate
09:43 egonw_ kubuntu++
09:43 egonw_ skype--
09:45 jonalv egonw_: I thought you said you mic didn't work. What does that have to do with skype?
09:56 egonw_ ok, go ahead
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10:33 edrin joined #bioclipse
10:33 edrin hi
10:33 zarah hello edrin, you fantastic person you
10:39 egonw_ jonalv, Gpox: check out: http://www.ebi.ac.uk/chebi​/advancedSearchForward.do
10:39 zarah egonw_'s link is also http://tinyurl.com/yjpmj8m
10:39 egonw_ olass: you too...
10:39 egonw_ that's the new jchempaint applet
10:40 jonalv egonw: looks nice
10:41 samuell joined #bioclipse
11:33 * egonw is still reinstalling eclipse :(
11:34 egonw can someone please fix the nasty JavaScript editor bug... ?
11:34 zarah egonw: You have new messages. Write '/msg zarah @messages' to read them.
11:34 egonw just tell me what info you need...
11:34 egonw but please fix it
11:43 Gpox @pz javascript
11:43 zarah [761] JsEditor edits a file backend, ... http://tinyurl.com/np3zzr
11:43 zarah [1657] running JavaScript from script... http://tinyurl.com/yab7mlc
11:43 zarah [1443] Managers initialized in backgr... http://tinyurl.com/yzn393r
11:43 zarah [1422] Managers should be able to clo... http://tinyurl.com/yedkpbw
11:44 zarah [1377] Make MolTable available from J... http://tinyurl.com/yhdlntc
11:44 zarah Entire list (20) at http://tinyurl.com/y9nxdhl
11:44 egonw better said... the problem that the plugin does not compile...
11:44 egonw which causes the runtime problem
11:45 edrin the net.bioclipse. editor or jsexecution ?
11:45 egonw last one
11:45 edrin it compiled here, but i did not try the code you provided in the bugreport
11:45 egonw @bug 1657
11:45 zarah http://pele.farmbio.uu.se/cgi-bi​n/bugzilla/show_bug.cgi?id=1657
11:46 egonw edrin: right... that's the problem
11:46 egonw it does not compile here...
11:47 edrin ok, so no script at all would run on your platform right now?
11:47 egonw not from the editor
11:47 egonw I can copy/paste to the console
11:48 edrin i can try to run code in the editor tonight and/or at weekend but
11:48 edrin have teaching now
11:48 egonw i'm sure is still works for you
11:49 egonw i am not interested in hearing that it worksforme...
11:49 edrin egonw: sure
11:49 edrin egonw: maybe you have two rhino libraries in your runtime?
11:49 egonw what this needs is the responsible author to tell me what he needs to know why the .jseditor is conflicting with the eclipse core about the rhino plugin
11:49 edrin could this be?
11:50 egonw edrin: I have not added rhino anywhere
11:50 egonw so, no
11:50 egonw edrin: please make you run 2.2.x branch when you test
11:50 edrin i think we had once a problem because there were two rhino libraries available coming with some packages. i.e. it is in spring bundle but also in java 6 ?
11:51 edrin ok
11:51 egonw java5 is no longer supported with security fixes
11:51 egonw everyone is aware of that, not?
11:51 edrin egonw: i think i islolate the problem by reducing the number of features
11:52 edrin running the plain bc2 core plugins only for example and then try to run a script
11:52 edrin egonw: I did not know!
11:53 egonw http://java.sun.com/produc​ts/archive/eol.policy.html
11:53 zarah egonw's link is also http://tinyurl.com/3vmhsk
11:53 edrin egonw: can you run the script if you just run the bc2 core feature ?
11:53 egonw it does not compile at all
11:53 egonw that is causing the runtime error
11:53 egonw no, it does not run with just bioclipse.product
11:54 edrin you have a red cross in the eclipse IDE on this project !?
11:54 egonw yes
11:54 edrin oh ok
11:54 edrin ah!
11:54 edrin reading your last bugreport addon:
11:54 edrin Access restriction: The method hasExplicitGlobal() from the type ContextFactory
11:54 edrin is not accessible due to restriction on required library
11:54 edrin /usr/lib/jvm/java-6-openjdk/jre/lib/rhino.jar
11:55 egonw that kind of compile error :)
11:55 egonw sorry for the confusion
11:55 edrin /usr/lib/jvm/java-6-openjdk/jre/lib/rhino.jar <- obviously i guess this is as I said
11:55 edrin :)
11:55 egonw indeed
11:55 edrin egonw: I think jonathan and me agreed on using the spring rhino.jar
11:56 edrin egonw: the .jar is located in the javascript core plugin thing
11:56 edrin (although it should be in the jsexecution in my opinion)
11:56 egonw btw, this is the whole xerces mess all over again...
11:56 edrin jonalv: available?
11:57 edrin where is the rhino.jar?
11:57 edrin egonw: the rhino.jar in java6 is most likely another version
11:57 egonw sure
11:57 egonw so, how does this get fixed
11:57 egonw ?
11:58 edrin can you specifically import the rhino export from the core javascript manager thing?
11:58 * egonw is pretty sure he cannot
11:59 edrin egonw: or: just delete rhino.jar from your java6 :)
11:59 egonw sure
11:59 egonw (not)
12:00 edrin ohm
12:01 edrin egonw: if i remember correctly it was not possible to define a certain rhino.jar version to use in the plugin
12:02 edrin egonw: I dont have eclipse here now, i can try and see later today
12:02 edrin have to do students now
12:02 egonw thanx
12:02 edrin sorry
12:02 egonw ack
12:03 egonw olass: confirmed... the Bioclipse Statistics features was not bioclipse.statistics
12:03 egonw but directly in my workspace :(
12:07 egonw eclipse---
12:07 egonw I can't even fucking install a JRE in it right now
12:08 egonw (which is independent from the jsexecution problem)
12:08 egonw but bloody annoying as I cannot fix anything right now :(
12:09 * egonw searches for eclipse log files
12:09 egonw hoping he gets some hint why things fail
12:22 CIA-51 bioclipse.joelib: Egon Willighagen master * r519f288 / (5 files in 4 dirs): Bumped version to 2.2.0.RC1 for the upcoming release candidate - http://bit.ly/1nIq6M
12:22 CIA-51 bioclipse.rdf: Egon Willighagen master * rc06a0b4 / (2 files): Implemented searching for BSLs on MyExperiment (implements #1655) - http://bit.ly/4hODnU
12:22 CIA-51 bioclipse.rdf: Egon Willighagen master * r2c443a5 / (25 files in 10 dirs): Moved plugins to the bioclipse.social repository and into the Bioclipse Social Feature (fixes #1656) - http://bit.ly/3NHhMa
12:22 CIA-51 bioclipse.rdf: Egon Willighagen master * rc9b8443 / (11 files in 9 dirs): Bumped version to 2.2.0.RC1 for the upcoming release candidate - http://bit.ly/2hx2hi
12:22 zarah bug #1656 | http://tinyurl.com/yzkw9nd
12:23 * egonw is merging 2.2.x changes into master, to make at least something work
12:23 egonw git++
12:29 olass egonw: did you remove the old tanimoto code and merge funct with your new?
12:29 olass ping me when done..
12:29 * olass needs to buy more flour
12:39 egonw olass: ping
12:39 egonw olass: read IRC
12:39 egonw eclipse stopped working
12:40 egonw no clue what is wrong
12:40 egonw can't even import a project into the workspace
12:51 egonw samuell: https://bugs.launchpad.net/ubun​tu/+source/eclipse/+bug/443004
12:53 egonw ubuntu++
12:53 egonw for shipping the current actualy version of eclipse
12:53 egonw kubuntu++
13:08 * olass is back from the store with flour
13:08 olass egonw: problem solved?
13:09 olass (with eclipse I mean)
13:09 egonw seems so
13:09 egonw but I have a fresh install
13:09 egonw and need to reinstall all sorts of plugins...
13:10 egonw birt, mylyn, ...
13:10 olass should be fairly easy
13:11 olass ok, then I wait for you with redesigning the context menu
13:11 olass since else we will conflict
13:12 egonw btw, did you move the stats plugins to the bioclipse.core repository too?
13:12 olass no
13:13 olass let's worry about that later
13:13 egonw you filed a report
13:13 olass did I?
13:13 egonw sure you did
13:14 olass @pz statistics
13:14 zarah olass: I couldn't find anything on 'statistics' in the database.
13:14 olass @pz stats
13:14 zarah olass: I couldn't find anything on 'stats' in the database.
13:14 olass egonw: bug no?
13:14 * olass must have forgotten
13:15 olass egonw: how can I help right now?
13:16 * olass feels he is just waiting for egonw before fixing the context menus and then exporting
13:16 egonw I think I have things up an running now
13:16 olass great
13:18 CIA-51 bioclipse.cheminformatics: Egon Willighagen 2.2.x * r98d74ca / plugins/net.bioclipse.cdk.ui/plugin.xml : PDB is not yet supported (fixes #1713) - http://bit.ly/1OaaYN
13:18 zarah bug #1713 | http://tinyurl.com/ylz592s
13:18 * egonw loves to be able to do 'aptitude install eclipse' and get a working 3.5.1 installation
13:18 egonw kubuntu++
13:19 * olass loves to be able to skype on mac
13:19 olass mac++
13:20 * egonw loves to be able to skype without a computer
13:20 * olass loves freshly baked bread
13:21 egonw olass: ping
13:21 egonw <count value="(2-"/>
13:21 egonw can I also do:
13:21 olass pong
13:21 egonw value="(0-3)" o "1-2" ?
13:21 olass hmm
13:21 olass 1,2 I would guess
13:21 olass mom
13:24 olass http://help.eclipse.org/galileo/index.jsp?topic=/o​rg.eclipse.platform.doc.isv/reference/extension-po​ints/org_eclipse_core_expressions_definitions.html
13:24 zarah olass's link is also http://tinyurl.com/y8qbozs
13:24 olass click 'count'
13:25 egonw ok, so we get:
13:25 egonw count value="1"
13:25 egonw count value="2"
13:25 egonw wrapped in or
13:25 olass sounds reasonable
13:25 egonw oh crap....
13:26 egonw no of course not, idiot
13:26 egonw I only need 2
13:26 egonw :(
13:26 egonw olas-- (for not having zarah slap egonw in the face with a fash)
13:29 olass @slap egonw
13:29 * zarah hits egonw with a hammer, so he breaks into a thousand pieces
13:30 olass woops
13:30 CIA-51 bioclipse.cheminformatics: Egon Willighagen 2.2.x * r5cbbd2c / (2 files in 2 dirs): Restrict this handler to 2 resources, and remove the wizard for which we have the Tanimoto Matrix handler (fixes #1711) - http://bit.ly/4iT0T
13:30 zarah bug #1711 | http://tinyurl.com/yzwvgrn
13:30 egonw olass: for the title:
13:30 egonw tanimoto should be available for 1 or two selections
13:30 egonw @slap olas
13:30 * zarah locks up olas in a Monad
13:30 olass egonw: could we just call it tanimotoHandler?
13:30 olass and have it available for 2+ selections?
13:31 olass "(1-"
13:31 egonw yes, files a bug report for code clean up
13:31 egonw -s
13:31 olass that's what we said in the skype call earlier...
13:31 olass ok, I can fix that
13:31 olass if you do matrix labels
13:31 olass ok?
13:32 olass or do you need more time on the current solution?
13:32 * egonw is not sure he understands what olas is talking about...
13:32 egonw what do you want to do?
13:32 olass redisgn context menus, bug 1714
13:32 egonw I don't remember skyping on merging the (code of the) two handlers...
13:33 egonw ah, yes, please take that one
13:33 olass egonw: we should remove the old tanimoto we said
13:33 olass and replace with new
13:33 * egonw is working on 1712
13:33 * egonw is leaving for home in 30 minutes
13:33 egonw olass: that part is done
13:33 egonw see that commit
13:33 egonw it's just split up into two handlers
13:33 olass why?
13:33 egonw and that code should be merged, just not now
13:33 egonw because it already was
13:33 olass ok
13:34 olass I see
13:34 egonw git log
13:34 olass ok, you are done with tanimoto then
13:34 * olass takes over the tanimoto bugs
13:34 egonw just the handlers
13:34 egonw matrix stuff labeling is left
13:34 egonw and still no clue why win does not have file extension
13:34 egonw code is pretty clear about adding it
13:35 olass egonw: I think win problem is solved if we add matrix plugin
13:35 olass please do matrix labels, bug 1715
13:35 * olass digs into context menus
13:37 egonw olass: jmol is part of the bioclipse platform, right?
13:37 olass no
13:38 olass cheminfo feature
13:38 olass right, platform contains cheminfo feature
13:38 egonw and that is part of the platform feature
13:38 olass so, yes
13:38 egonw good
13:39 olass egonw: did you really try that the new tanimoto context menu works?
13:39 olass It looks incorrect to me..
13:39 * olass will try it now to be sure
13:40 * olass is fixing
13:40 CIA-51 bioclipse.cheminformatics: Egon Willighagen 2.2.x * rb081849 / plugins/net.bioclipse.cdk.ui/src/net/biocli​pse/cdk/ui/handlers/KabschAlignHandler.java : Force opening in the Jmol editor, which is currently part of the Bioclipse Platform feature anyway (fixes #1716) - http://bit.ly/2JeWYF
13:40 zarah bug #1716 | http://tinyurl.com/y9pv3vg
13:40 egonw yes, I tried...
13:41 egonw what is the problem?
13:42 olass egonw: can you calculate RMSD between two 3D-molecules?
13:42 olass does the handler suppot that?
13:42 egonw yes, I can
13:42 egonw and that's not tanimoto
13:42 olass expression says (2-
13:42 egonw oh...
13:42 olass ok, changing to (1-
13:42 egonw no, RMSD between 2 molecules was never asked for
13:42 egonw and I hate to see a single value open in a matrix editor...
13:43 egonw but happy if you change that anyway...
13:43 olass no, it should open in a dialog as tanimoto
13:43 egonw ah, a new feature...
13:43 * olass thinks that tanimoto and RMSD should behave similarly
13:43 egonw did you send me an example .csv file with labels?
13:43 olass ah, no
13:43 olass sry
13:43 olass will do that right away
13:45 olass egonw: sent
13:45 egonw what account?
13:45 olass gmail
13:45 * egonw has not received anything yet
13:46 egonw gist?
13:46 olass ok, mom
13:47 olass egonw: http://gist.github.com/227057
13:47 egonw ok ,thanx
13:48 egonw crap
13:48 egonw file name is not going to work
13:48 egonw not with some extra hacking...
13:53 * egonw has 10 minutes left
13:54 * samuell just mailed the SWI Prolog mailing list... *hoping for a good answer* (They're btw very good at answering in general)
13:55 * samuell is still having java stack size problem. Using -Xss improves the situation, but by far not enough, it appeared.
13:55 * samuell hopes the SWIPL guys knows a better approach.
14:05 egonw olass: ping
14:06 olass pong
14:06 egonw you'll have to do the RMSD labels
14:06 olass oh
14:06 egonw or otherwise wait for me to finish it later today
14:06 olass problems?
14:06 * olass will try
14:06 egonw tanimoto is about done
14:06 egonw not commited yet
14:06 olass ok, then I can look at that code
14:06 olass I fix
14:07 egonw no, not fix
14:07 olass almost done with context menus too
14:07 egonw port
14:07 * olass port
14:07 egonw and do check that opening in the matrix editor works
14:07 egonw I am adding code to force that
14:07 egonw but...
14:07 olass will check
14:07 egonw unable to test right now
14:08 olass egonw: if problem arises I will submit bug
14:08 olass if I can't fix
14:08 egonw ok, here goes:
14:08 CIA-51 bioclipse.cheminformatics: Egon Willighagen 2.2.x * r7b03ed5 / (2 files in 2 dirs): Added labels to the tanimoto CSV output (addresses #1715) - http://bit.ly/1BjNPY
14:08 zarah bug #1715 | http://tinyurl.com/yfun8rc
14:09 egonw bye!
14:10 egonw I should be back online around 17:00
14:13 olass bye egonw
14:14 * olass will be here then
14:17 edrin Structure of Protein Interaction Networks and Their Implications on Drug Design
14:17 edrin PLoS Computational Biology http://www.ploscompbiol.org/article/info​%3Adoi%2F10.1371%2Fjournal.pcbi.1000550
14:17 zarah edrin's link is also http://tinyurl.com/yhtp5g7
14:17 edrin interesting
14:32 masak joined #bioclipse
14:49 CIA-51 bioclipse.core: Ola Spjuth 2.2.x * ra40acf7 / features/net.bioclipse.core_feature/feature.xml :
14:49 CIA-51 bioclipse.core: Added statistics plugins to core feature.
14:49 CIA-51 bioclipse.core: * net.bioclipse.statistics
14:49 CIA-51 bioclipse.core: * net.bioclipse.statistics.jama
14:49 CIA-51 bioclipse.core: * net.bioclipse.chart - http://bit.ly/1wTXJH
14:54 jonalv joined #bioclipse
15:02 jonalv frozen-feeline++
15:03 jonalv (frozen feeline)++
15:39 egonw joined #bioclipse
15:39 samuell Indeed they had good suggestions at the SWIPL mailinglist :)
15:39 * samuell has things to try now
15:41 jonalv egonw: ping
15:42 egonw pong
15:42 jonalv egonw: can you merge in my stuff super fast so olass can build from your fork?
15:43 olass jonalv: can you also merge in my pull request?
15:43 olass egonw: can you also merge in my pull request?
15:43 olass sorry, not jonalv
15:43 olass egonw: ping me when you have applied the patches (or if you did not)
15:44 olass egonw: can you also apply jonalvs fixes to outline for load append?
15:44 olass it is better with them than without
15:44 olass solution is not optimal but OK for now
15:44 olass egonw: you there?
15:44 egonw sort of...
15:44 * jonalv grabs some water, brb
15:45 egonw jonalv: three patches from you?
15:48 egonw jonalv: where did those outline patches go?
15:48 CIA-51 bioclipse.cheminformatics: jonalv 2.2.x * rbcf93e6 / plugins/net.bioclipse.cdk.business/src/ne​t/bioclipse/cdk/business/CDKManager.java : layout - http://bit.ly/1RCKWJ
15:48 CIA-51 bioclipse.cheminformatics: jonalv 2.2.x * r898967f / plugins/net.bioclipse.cdk.business/src/ne​t/bioclipse/cdk/business/CDKManager.java : fixed generics - http://bit.ly/2DTipY
15:48 CIA-51 bioclipse.cheminformatics: jonalv 2.2.x * r99f327e / plugins/net.bioclipse.cdk.business/src/ne​t/bioclipse/cdk/business/CDKManager.java : added labels to calculateRMSD - http://bit.ly/153x8Y
15:48 egonw or are those only 0000-foo.patch ?
15:49 olass egonw: could you aply my patches too?
15:50 egonw no need to rush
15:50 * olass wants to test before RC1 build
15:50 jonalv egonw: those outline patches are in your inbox on gmail
15:50 jonalv egonw: I removed them from my computer...
15:51 CIA-51 bioclipse.cheminformatics: Ola Spjuth 2.2.x * r300bca7 / plugins/net.bioclipse.chemoinformatics/plugin.xml : Added a submenu "Compare" for cheminformatics. - http://bit.ly/evjay
15:51 CIA-51 bioclipse.cheminformatics: Ola Spjuth 2.2.x * rb87c984 / plugins/net.bioclipse.cdk.ui/plugin.xml :
15:51 CIA-51 bioclipse.cheminformatics: Adapted menus for comparison and superimpose.
15:51 CIA-51 bioclipse.cheminformatics: Solves bug #1714. - http://bit.ly/2iZIs5
15:51 egonw jonalv: ok
15:51 zarah bug #1714 | http://tinyurl.com/yayn9dr
15:54 egonw jonalv: OK, if I collapse them?
15:54 jonalv egonw: into one commit? sure...
15:58 olass egonw: could you update your blog post with new screenshot? Context menus have changed...
15:59 olass egonw: and there's the problem with contenttypes for SDF with 3D not opening in jmol but in SDFEditor..
15:59 CIA-51 bioclipse.cheminformatics: jonalv 2.2.x * r562f0c9 / (2 files in 2 dirs):
15:59 CIA-51 bioclipse.cheminformatics: Only rebuild outline model on load append.
15:59 CIA-51 bioclipse.cheminformatics: Fixes bug: #1686 - http://bit.ly/3H9nBb
15:59 zarah bug #1686 | http://tinyurl.com/yjbpphz
15:59 * olass wonders if he filed that as a bug
15:59 egonw olass: opening the kabsch results is now hardcoded to open in the Jmol editor
16:00 egonw there is no alternativ
16:00 egonw e
16:00 olass ok, sounds suitable
16:00 egonw that's why I asked it to be part of the bioclipse platform feature
16:00 egonw if it was
16:00 olass and blog screenshot? will you update?
16:00 * olass will now test all new features
16:04 olass egonw: is it possible to show all models in jmol upon superimpose?
16:04 olass now you need to collapse jmol outline and select all models...
16:04 olass apart from this it looks really good!
16:06 olass damn, drag into moltable is crappy
16:06 olass really crappy
16:07 egonw no alternative to collapsing the outline and showing all models...
16:07 egonw as said, we really need to schedule a weeks Jmol hacking session...
16:07 olass egonw: can you not send a jmol script?
16:07 egonw no
16:07 egonw tried that
16:07 olass ok..
16:07 egonw but there seems to be something broken, but have not been able to pinpoint the problem
16:07 olass that is what the outline does..
16:08 olass ok
16:08 egonw no shortcut I am afraid :(
16:08 egonw yes, and we know how well the outline is functioning
16:08 olass ?
16:08 olass it works to some extent at least
16:08 olass not 100% I agree
16:08 olass but it is not useless
16:08 egonw you nailed it...
16:09 olass ok, what to do, wait for Gpox tomorrow to fix the drop into moltable or release as is?
16:10 egonw how bad is the DnD ?
16:10 olass try it..
16:10 egonw are you doing it properly?
16:10 olass it adds the mol to the end
16:10 egonw yes, mom
16:10 olass no editor dirty
16:10 egonw yes, at the end makes sense
16:11 olass and does not extend the number of mols so you do not see the ones you drop
16:11 egonw that's what he said
16:11 egonw no internal DnD
16:11 olass but if I drop I want to be able to see what I drop
16:11 egonw ok, marking dirty should be trivial
16:11 olass and editor should be dirty allowing me to save
16:12 olass it seems the list shown in the GUI table does not get its count increased on a drop
16:12 olass whatever, Gpox can fix that tomorrow
16:12 egonw indeed
16:12 egonw I also do not seem to be able to drag in a second mol
16:12 egonw first works fine
16:13 olass I think second works, but you just don't see it
16:13 egonw how would I know ?
16:13 olass scroll with arrows
16:13 olass you get stacktrace on last entry
16:13 olass (known bug)
16:13 egonw I can only scroll up
16:13 egonw ah, but indeed...
16:14 egonw after having done that... ther others show up...
16:14 egonw ok, what shall I do...
16:14 egonw fix that, or make screenshots?
16:16 olass do you think you can you fix it?
16:16 olass that would be great..
16:16 olass I filed bug 1717 and 1718 for Gpox...
16:17 egonw please reassign them to me, so I can try...
16:17 egonw if I file, I'll assign back to Gpox
16:19 egonw if I fail...
16:22 egonw olass: ping
16:22 egonw I do not see the stats plugins show up in the core_feature
16:26 jonalv egonw: you must checkout statistics separetley, have you done that?
16:27 jonalv right msut restat computer due to installations. What is this? 1996?
16:27 jonalv brb...
16:27 egonw wow...
16:27 egonw jonalv++ (for being funny)
16:33 egonw olass: screenshots updated
16:35 olass egonw++
16:35 olass egonw: I pushed
16:35 egonw umm... what?
16:35 olass [15:49] < CIA-51> bioclipse.core: Ola Spjuth 2.2.x * ra40acf7 / features/net.bioclipse.core_feature/feature.xml :
16:35 olass [15:49] < CIA-51> bioclipse.core: Added statistics plugins to core feature.
16:35 olass [15:49] < CIA-51> bioclipse.core: * net.bioclipse.statistics
16:35 olass [15:49] < CIA-51> bioclipse.core: * net.bioclipse.statistics.jama
16:36 olass [15:49] < CIA-51> bioclipse.core: * net.bioclipse.chart - http://bit.ly/1wTXJH
16:36 egonw ah, ok... only then...
16:36 egonw today...
16:36 olass yes?
16:37 egonw I thought you said you'd done that yesterday...
16:37 jonalv joined #bioclipse
16:38 jonalv oh hai
16:38 zarah oh hai jonalv
16:38 egonw olass: are you running REST services for Rajarshi?
16:38 olass yes
16:38 olass on ws1
16:39 olass not for him, for everyone
16:39 egonw indeed
16:39 egonw you mentioned something some day
16:39 egonw but was not aware of the scope
16:39 egonw http://baoilleach.blogspot.com/2009/11/​introducing-webel-cheminformatics.html
16:39 olass it's been up since
16:39 zarah egonw's link is also http://tinyurl.com/yggtqtv
16:41 egonw webel is using those services
16:41 egonw period
16:41 egonw nothing else
16:42 egonw just webservices
16:43 olass egonw: how is progress with 1717 and 1718?
16:43 * olass is waiting to build RC1
16:43 egonw looking at the code right now
16:43 olass ok
16:44 * olass will wait a while longer then
16:48 * egonw is not sure...
16:49 egonw he sees a way to get the dirty stuff working...
16:49 egonw but not sure it is the best way...
16:49 egonw or a good way, for that matter...
16:52 * egonw is more certain about the fix for the number of items... and trying it in action now
16:53 egonw yes, that works nicely
16:53 egonw ok, one down...
16:54 egonw olass: did you reassign those bugs to me?
16:54 olass nope
16:54 olass I will now
16:55 olass egonw: done
16:56 CIA-51 bioclipse.cheminformatics: Egon Willighagen 2.2.x * rfc08a40 / plugins/net.bioclipse.cdk.ui.sdfedi​tor/src/net/bioclipse/cdk/ui/sdfedi​tor/editor/MoleculeTableViewer.java : Trigger a refresh so that the new arrivals show up in the table (fixes #1718) - http://bit.ly/2N7dvz
16:56 zarah bug #1718 | http://tinyurl.com/yfbdhqy
16:57 egonw olass: ping
16:57 egonw I will not be able to 'fix' 1717...
16:57 egonw neither doSave() nor doSaveAs() are actually implemented...
16:58 egonw and I do not see this hapening in 2.2 :(
16:58 egonw got to go for dinner now
16:58 olass ok
16:59 olass so all done now?
16:59 egonw guess so
16:59 olass egonw: reassign 1717 to Gpox
16:59 egonw sure, already done :)
16:59 olass ok, then RC1 now
16:59 egonw ok, don't forget to tag
16:59 olass how do I tag?
17:00 egonw git tag someTag
17:00 egonw git push origin --tags
17:00 olass thx
17:00 olass bye
17:00 egonw ok cu tomorrow!
17:00 egonw spika time
17:03 jonalv joined #bioclipse
17:03 jonalv and we are back
17:03 jonalv hi zarah
17:03 jonalv zarah?
17:03 jonalv "ping
17:03 jonalv @ping
17:03 zarah jonalv: pong
17:12 olass jonalv: hi
18:12 sneumann__ joined #bioclipse
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20:22 egonw_ joined #bioclipse
20:41 egonw damn... warren delano (pymol) passed away :(
21:14 masak :/

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