Camelia, the Perl 6 bug

IRC log for #bioclipse, 2010-01-04

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All times shown according to UTC.

Time Nick Message
07:55 egonw joined #bioclipse
08:03 * egonw is slowly waking up...
08:12 Gpox joined #bioclipse
08:21 egonw hi Gpox
08:23 Gpox Hello
08:24 zarah oh hai Gpox
08:39 mgerlich joined #bioclipse
08:51 sneumann__ joined #bioclipse
09:24 * egonw is trying to install BIRT
09:44 * egonw has given up
09:57 sneumann__ After only 20 mins ?!
09:57 sneumann__ Happy new year ;-)
09:58 egonw same here
10:04 olass joined #bioclipse
10:20 olass moin
10:20 zarah oh hai olass
10:20 zarah olass: You have new messages. Write '/msg zarah @messages' to read them.
10:20 olass @msg
10:20 zarah olass: 2 h 14 m 14 s ago, egonw said nice bioclipse-in-the-movies :)
10:35 egonw joined #bioclipse
11:14 masak joined #bioclipse
11:54 edrin joined #bioclipse
11:55 edrin hi
11:55 zarah hello edrin, you fantastic person you
11:55 edrin happy new year to all.
12:04 masak likewise.
12:17 egonw same here
14:21 masak I'm looking at the code in http://www.biojava.org/wiki/BioJ​ava:CookBook:Interfaces:Features
14:21 zarah masak's link is also http://tinyurl.com/ygn4b4v
14:21 masak and I have some questions.
14:22 masak does anyone here have prior experience with BioJava Features? (i.e. sequence annotations with a given range or location associated with them)
14:30 egonw not here
14:31 masak the thing that confuses me about the code is that seq.createFeature(); is run once, but the picture shows two sequences.
14:31 masak seems that the code is incomplete or incorrect.
15:58 sneumann__ could somebody quickly verify that www.bioconductor.org gives a "not found" ?
15:58 sneumann__ They seem to have a DNS problem.
15:58 egonw yes, it seems they do
15:59 masak still trying to resolve here.
15:59 masak http://downforeveryoneorjustme.com/ says it's down for everyone. :)
15:59 zarah masak's link is also http://tinyurl.com/3b5rds
16:00 masak yep; getting Error 105 (net::ERR_NAME_NOT_RESOLVED): The server could not be found.
16:01 sneumann__ merci
16:15 jonalv joined #bioclipse
16:21 CIA-71 bioclipse.core: Carl Masak 2.2.x * r50d5628 / plugins/net.bioclipse.core/src/net/b​ioclipse/core/domain/ISequence.java :
16:21 CIA-71 bioclipse.core: [ISequence] added getParsedResource method
16:21 CIA-71 bioclipse.core: It was already declared in BiojavaSequence anyway. - http://bit.ly/6FQ02i
16:21 masak very rudimentary feature support is now available. :)
16:22 masak latest 2.2-releng branch of bioclise.biojava -- and possibly explicit instructions -- needed.
16:27 egonw olass: what's the state of 2.2.0 ?
17:00 jonalv egonw: Can you help? What am I doing wrong? http://pastebin.com/mdbe68a7
17:02 jonalv cd ..
17:02 jonalv rm -rf bioclispe.chemoinformatic
17:02 egonw mom
17:03 egonw let me check
17:03 egonw I guess the URI is wrong...
17:03 jonalv egonw: I tried all threee I got from github neither one worked
17:03 egonw try: git://github.com/egonw/bio​clipse.cheminformatics.git
17:03 egonw :)
17:03 egonw funny sentence...
17:04 egonw neither is for two options...
17:04 egonw not for three :)
17:04 egonw none worked
17:04 jonalv egonw: neither that one worked either ;)
17:04 egonw hahahaha
17:04 jonalv same same
17:04 jonalv I mean same error message
17:04 egonw mmm...
17:05 * jonalv will just check out from you then instead
17:05 jonalv cd ..
17:05 egonw mmm
17:05 egonw I just managed to pull from yours
17:05 jonalv but wrong window again
17:05 Gpox should you not be in a git repo and not in ~/git ?
17:05 egonw with the URI :
17:05 egonw git://github.com/jonalv/bio​clipse.cheminformatics.git
17:06 jonalv Gpox: that\s an intresting point
17:06 egonw jonalv: what's the output of 'pwd' ?
17:06 jonalv Gpox++
17:06 jonalv that was it
17:06 jonalv (gah)
17:06 egonw yes, good catch
17:06 egonw Gpox++
17:06 egonw properly reading error messages is an art :)
17:06 Gpox fatal: Not a git repository (or any of the parent directories): .git kinda gives it away
17:07 jonalv I thought it was talking about the path
17:07 egonw Gpox: yes, it does
17:07 egonw ok, got to go for dinner
18:32 sneumann__ joined #bioclipse
19:24 sneumann joined #bioclipse
20:32 edrin left #bioclipse

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