Camelia, the Perl 6 bug

IRC log for #bioclipse, 2010-01-05

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All times shown according to UTC.

Time Nick Message
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08:42 olass moin
08:56 sneumann moin
08:56 jonalv joined #bioclipse
09:01 * jonalv just found http://wiki.bioclipse.net/i​ndex.php?title=UbuntuKarmic, running Bioclipse on Ubuntu sure seems complicated...
09:02 jonalv makes me wonder how well Bioclipse that we ship runs on Ubuntu with java 6 and stuff...
09:10 egonw it does not
09:10 egonw well, it does
09:11 egonw but at least the JS editor run button does not work
09:11 egonw jonalv: I made that page yesterday
09:11 egonw per a bug report
09:11 jonalv egonw: is there a bug repport for that?
09:11 egonw @pz ubuntu
09:11 egonw yes
09:11 egonw the problem is that Java6 provides rhino itself
09:11 egonw and you get a ABI conflict
09:11 egonw @bug ubuntu
09:12 egonw where is zarah??
09:12 jonalv I wonder if pele is still down
09:12 egonw pele is down?
09:12 egonw oh no
09:12 egonw pele is down
09:12 jonalv egonw: seems so...
09:12 egonw that happened last night then
09:12 egonw was using it around 8pm yesterday
09:13 jonalv hm yea or evenining
09:13 jonalv oh
09:13 jonalv that's strange becaseu it was gone at about 7 I think
09:13 egonw damn...
09:13 egonw anyone on site?
09:13 * jonalv is at bmc yea
09:14 egonw ah, indeed... might be
09:14 * jonalv guesses he should take a trip over to the guys close Linneus center...
09:14 egonw the git svn dcommit indeed seemed to have failed at 19:45
09:14 * egonw is stuck at home
09:14 jonalv okey so it probably failed somewehre around 19:45 then...
09:15 egonw or before...
09:15 egonw yes
09:15 egonw at least at 15:52 it was still working
09:15 jonalv I will head over and see who I can get a hold off
09:15 * jonalv afk
09:15 egonw great, thanx!
09:24 jonalv egonw: they are apharently working on it
09:24 egonw ah, cool
09:24 egonw they?
09:24 egonw so, it's not merely rebooting the machine?
09:25 * jonalv is not so sure zarah restart auomagicly though
09:25 jonalv egonw: no apharently 4 machines siapeared yesterday
09:25 egonw that we can do when it is back online
09:25 egonw ah, sounds like a router issue
09:25 jonalv he said something about it maybe being a broken switch
09:25 egonw perhaps a 2k10 bug somewhere?
09:25 egonw yes, sounds likely
09:26 jonalv probably some broken network hardware...
09:26 jonalv nah I meant we won\t see that pele is back by zarah logging on
09:28 jonalv olass: ping
09:28 olass I emailed BMC comp dept
09:28 olass yesterday
09:30 miguelrojasch joined #bioclipse
09:31 egonw hi miguelrojasch
09:31 egonw happy new year
09:31 miguelrojasch hi egonw. Happy new year and best wishes
09:31 miguelrojasch for everyone
09:42 olass pele should be online now
09:43 olass two fuses had blown
09:43 olass jonalv: can you restart zarah?
09:44 jonalv olass: uhm not really, I guess I could figure it out but I think I have more important thigns to do
09:44 olass yup
09:44 olass let's wait for masak
09:58 zarah joined #bioclipse
09:58 egonw hi zarah
09:58 egonw welcome back
09:59 egonw @msg
09:59 zarah egonw: You have no new messages.
10:02 egonw zarah: thx
10:02 zarah you're welcome, egonw :)
10:09 egonw @pz ubuntu
10:09 zarah [1722] Patch boot scripts for platfor... http://tinyurl.com/yafe5c9
10:09 zarah [1559] R Console does not run on Ubun... http://tinyurl.com/yjtltxv
10:09 zarah Entire list at http://tinyurl.com/yeotm44
10:10 egonw jonalv: the bug report is #1559
10:10 jonalv egonw: oh isn\t that just the R console?
10:12 egonw oops
10:12 egonw sorry, misread...
10:12 egonw just saw console and ubun...
10:12 egonw mom
10:13 CIA-71 bioclipse.core: jonalv 2.2.x * rcf83b40 / plugins/net.bioclipse.core/src/net/bi​oclipse/core/util/TimeCalculator.java : changed from "almost done" to "less than a second" - http://bit.ly/4SCSTz
10:14 CIA-71 bioclipse.core: jonalv 2.2.x * r656114f / (5 files in 3 dirs): Merge remote branch 'origin/2.2.x' into 2.2.x - http://bit.ly/5fXv3I
10:14 jonalv yea yea I messed up again. I tend to do that a lot...
10:14 jonalv grankly I find it hard too care about merges
10:14 jonalv |frankly | to
10:16 egonw grmph..
10:16 egonw cannot find the report :(
10:16 egonw well, it's in there somewhere...
10:16 egonw report from me, assigned to johannes
10:16 jonalv egonw: find it and give it to someone who actually runs Ubuntu
10:17 egonw no, it's not that...
10:17 egonw it's java6
10:17 egonw anyone with java6 will have that problem
10:18 egonw and since java5 is past EOL
10:18 egonw more and more people will
10:18 jonalv egonw: I think we might have to do something about this...
10:18 jonalv lots of people will be running Java 6 by now...
10:18 egonw yes, move to Java6 in 2.4
10:21 jonalv yea
10:22 egonw there are users with only Java5 though...
10:22 egonw or, so I was told...
10:25 * olass is getting tired of writing book chapters and wants to code
10:26 egonw same here
10:26 egonw deadline is today, not?
10:26 * egonw is wrapping up what he has now
11:08 masak joined #bioclipse
13:03 egonw jonalv: merged 2.2.x with master for bioclipse.cheminformatics
13:06 jonalv egonw: dz
13:46 olass where is the CIA bot?
13:52 egonw CIA-71
13:52 egonw olass: commit messages of large commits never seem to make the bot
13:53 egonw it's a pattern
13:53 olass right
14:26 sneumann joined #bioclipse
15:00 CIA-71 bioclipse.core: Carl Masak 2.2.x * r83f481c / (3 files in 2 dirs):
15:00 CIA-71 bioclipse.core: [ScriptingConsolveView] killed off waitUntilCommandFinished
15:00 CIA-71 bioclipse.core: ...and with that, carryOutCommandAndWait. Instead, the command is now
15:00 CIA-71 bioclipse.core: printed *after* it's run, along with its output. That way, we always get
15:00 CIA-71 bioclipse.core: the command printed with its respective output.
15:03 CIA-71 bioclipse.core: Carl Masak 2.2.x * rfbf65bd / plugins/net.bioclipse.scripting.ui/src/net/bioc​lipse/scripting/ui/views/GroovyConsoleView.java :
15:03 CIA-71 bioclipse.core: [GrooveConsoleView] removed waitUntilCommandFinished
15:03 CIA-71 bioclipse.core: No longer needed since the previous commit.
15:14 CIA-71 bioclipse.core: Carl Masak master * r83f481c / (3 files in 2 dirs):
15:14 CIA-71 bioclipse.core: [ScriptingConsolveView] killed off waitUntilCommandFinished
15:14 CIA-71 bioclipse.core: ...and with that, carryOutCommandAndWait. Instead, the command is now
15:14 CIA-71 bioclipse.core: printed *after* it's run, along with its output. That way, we always get
15:14 CIA-71 bioclipse.core: the command printed with its respective output. - http://bit.ly/72T7zP
15:14 CIA-71 bioclipse.core: Carl Masak master * rfbf65bd / plugins/net.bioclipse.scripting.ui/src/net/bioc​lipse/scripting/ui/views/GroovyConsoleView.java :
15:14 CIA-71 bioclipse.core: [GrooveConsoleView] removed waitUntilCommandFinished
15:14 CIA-71 bioclipse.core: No longer needed since the previous commit. - http://bit.ly/5Fs2Pd
15:14 CIA-71 bioclipse.core: jonalv master * re6a4aa3 / (4 files in 2 dirs): Merge remote branch 'origin/2.2.x'
15:41 CIA-71 bioclipse.core: Carl Masak 2.2.x * re5cdff3 / plugins/net.bioclipse.scripting.ui/src/net/biocli​pse/scripting/ui/views/ScriptingConsoleView.java :
15:41 CIA-71 bioclipse.core: [ScriptingConsoleView] fixed StringIndexOutOfBoundsException
15:41 CIA-71 bioclipse.core: Need to check the position of the string before doing arithmetic on it. - http://bit.ly/6wp3Wt
16:40 CIA-71 bioclipse.core: Carl Masak 2.2.x * r4758dee / plugins/net.bioclipse.scripting.ui/src/net/biocli​pse/scripting/ui/views/ScriptingConsoleView.java :
16:40 CIA-71 bioclipse.core: [ScriptingConsoleView] fixed StringIndexOutOfBoundsException
16:40 CIA-71 bioclipse.core: Yes, another one. Yes, very similar to the first one... :/ - http://bit.ly/5IZZjr
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22:41 egonw giving up on writing today... first chapter is pretty decent now...
22:41 egonw but second and third really need more work...
22:41 egonw (and all need serious proof reading :( )
22:43 egonw chapter 3 will be over 20 pages...
22:44 egonw I'm at 18 right now
22:44 egonw chapter 4 is at 4 pages
22:44 egonw as is chapter 7
22:49 olass egonw: yup, I am going to bed too
22:49 olass good job
22:49 olass g'night

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