| Time |
S |
Nick |
Message |
| 01:16 |
|
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ilogger2 joined #bioclipse |
| 07:27 |
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sneumann joined #bioclipse |
| 07:49 |
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egonw joined #bioclipse |
| 08:09 |
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Gpox joined #bioclipse |
| 08:27 |
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sneumann joined #bioclipse |
| 08:42 |
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olass joined #bioclipse |
| 08:42 |
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olass |
moin |
| 08:56 |
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sneumann |
moin |
| 08:56 |
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jonalv joined #bioclipse |
| 09:01 |
|
* jonalv |
just found http://wiki.bioclipse.net/inde[…]itle=UbuntuKarmic, running Bioclipse on Ubuntu sure seems complicated... |
| 09:02 |
|
jonalv |
makes me wonder how well Bioclipse that we ship runs on Ubuntu with java 6 and stuff... |
| 09:10 |
|
egonw |
it does not |
| 09:10 |
|
egonw |
well, it does |
| 09:11 |
|
egonw |
but at least the JS editor run button does not work |
| 09:11 |
|
egonw |
jonalv: I made that page yesterday |
| 09:11 |
|
egonw |
per a bug report |
| 09:11 |
|
jonalv |
egonw: is there a bug repport for that? |
| 09:11 |
|
egonw |
@pz ubuntu |
| 09:11 |
|
egonw |
yes |
| 09:11 |
|
egonw |
the problem is that Java6 provides rhino itself |
| 09:11 |
|
egonw |
and you get a ABI conflict |
| 09:11 |
|
egonw |
@bug ubuntu |
| 09:12 |
|
egonw |
where is zarah?? |
| 09:12 |
|
jonalv |
I wonder if pele is still down |
| 09:12 |
|
egonw |
pele is down? |
| 09:12 |
|
egonw |
oh no |
| 09:12 |
|
egonw |
pele is down |
| 09:12 |
|
jonalv |
egonw: seems so... |
| 09:12 |
|
egonw |
that happened last night then |
| 09:12 |
|
egonw |
was using it around 8pm yesterday |
| 09:13 |
|
jonalv |
hm yea or evenining |
| 09:13 |
|
jonalv |
oh |
| 09:13 |
|
jonalv |
that's strange becaseu it was gone at about 7 I think |
| 09:13 |
|
egonw |
damn... |
| 09:13 |
|
egonw |
anyone on site? |
| 09:13 |
|
* jonalv |
is at bmc yea |
| 09:14 |
|
egonw |
ah, indeed... might be |
| 09:14 |
|
* jonalv |
guesses he should take a trip over to the guys close Linneus center... |
| 09:14 |
|
egonw |
the git svn dcommit indeed seemed to have failed at 19:45 |
| 09:14 |
|
* egonw |
is stuck at home |
| 09:14 |
|
jonalv |
okey so it probably failed somewehre around 19:45 then... |
| 09:15 |
|
egonw |
or before... |
| 09:15 |
|
egonw |
yes |
| 09:15 |
|
egonw |
at least at 15:52 it was still working |
| 09:15 |
|
jonalv |
I will head over and see who I can get a hold off |
| 09:15 |
|
* jonalv |
afk |
| 09:15 |
|
egonw |
great, thanx! |
| 09:24 |
|
jonalv |
egonw: they are apharently working on it |
| 09:24 |
|
egonw |
ah, cool |
| 09:24 |
|
egonw |
they? |
| 09:24 |
|
egonw |
so, it's not merely rebooting the machine? |
| 09:25 |
|
* jonalv |
is not so sure zarah restart auomagicly though |
| 09:25 |
|
jonalv |
egonw: no apharently 4 machines siapeared yesterday |
| 09:25 |
|
egonw |
that we can do when it is back online |
| 09:25 |
|
egonw |
ah, sounds like a router issue |
| 09:25 |
|
jonalv |
he said something about it maybe being a broken switch |
| 09:25 |
|
egonw |
perhaps a 2k10 bug somewhere? |
| 09:25 |
|
egonw |
yes, sounds likely |
| 09:26 |
|
jonalv |
probably some broken network hardware... |
| 09:26 |
|
jonalv |
nah I meant we won\t see that pele is back by zarah logging on |
| 09:28 |
|
jonalv |
olass: ping |
| 09:28 |
|
olass |
I emailed BMC comp dept |
| 09:28 |
|
olass |
yesterday |
| 09:30 |
|
|
miguelrojasch joined #bioclipse |
| 09:31 |
|
egonw |
hi miguelrojasch |
| 09:31 |
|
egonw |
happy new year |
| 09:31 |
|
miguelrojasch |
hi egonw. Happy new year and best wishes |
| 09:31 |
|
miguelrojasch |
for everyone |
| 09:42 |
|
olass |
pele should be online now |
| 09:43 |
|
olass |
two fuses had blown |
| 09:43 |
|
olass |
jonalv: can you restart zarah? |
| 09:44 |
|
jonalv |
olass: uhm not really, I guess I could figure it out but I think I have more important thigns to do |
| 09:44 |
|
olass |
yup |
| 09:44 |
|
olass |
let's wait for masak |
| 09:58 |
|
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zarah joined #bioclipse |
| 09:58 |
|
egonw |
hi zarah |
| 09:58 |
|
egonw |
welcome back |
| 09:59 |
|
egonw |
@msg |
| 09:59 |
|
zarah |
egonw: You have no new messages. |
| 10:02 |
|
egonw |
zarah: thx |
| 10:02 |
|
zarah |
you're welcome, egonw :) |
| 10:09 |
|
egonw |
@pz ubuntu |
| 10:09 |
|
zarah |
[1722] Patch boot scripts for platfor... http://tinyurl.com/yafe5c9 |
| 10:09 |
|
zarah |
[1559] R Console does not run on Ubun... http://tinyurl.com/yjtltxv |
| 10:09 |
|
zarah |
Entire list at http://tinyurl.com/yeotm44 |
| 10:10 |
|
egonw |
jonalv: the bug report is #1559 |
| 10:10 |
|
jonalv |
egonw: oh isn\t that just the R console? |
| 10:12 |
|
egonw |
oops |
| 10:12 |
|
egonw |
sorry, misread... |
| 10:12 |
|
egonw |
just saw console and ubun... |
| 10:12 |
|
egonw |
mom |
| 10:13 |
|
CIA-71 |
bioclipse.core: jonalv 2.2.x * rcf83b40 / plugins/net.bioclipse.core/src/net/bioclipse/core/util/TimeCalculator.java : changed from "almost done" to "less than a second" - http://bit.ly/4SCSTz |
| 10:14 |
|
CIA-71 |
bioclipse.core: jonalv 2.2.x * r656114f / (5 files in 3 dirs): Merge remote branch 'origin/2.2.x' into 2.2.x - http://bit.ly/5fXv3I |
| 10:14 |
|
jonalv |
yea yea I messed up again. I tend to do that a lot... |
| 10:14 |
|
jonalv |
grankly I find it hard too care about merges |
| 10:14 |
|
jonalv |
|frankly | to |
| 10:16 |
|
egonw |
grmph.. |
| 10:16 |
|
egonw |
cannot find the report :( |
| 10:16 |
|
egonw |
well, it's in there somewhere... |
| 10:16 |
|
egonw |
report from me, assigned to johannes |
| 10:16 |
|
jonalv |
egonw: find it and give it to someone who actually runs Ubuntu |
| 10:17 |
|
egonw |
no, it's not that... |
| 10:17 |
|
egonw |
it's java6 |
| 10:17 |
|
egonw |
anyone with java6 will have that problem |
| 10:18 |
|
egonw |
and since java5 is past EOL |
| 10:18 |
|
egonw |
more and more people will |
| 10:18 |
|
jonalv |
egonw: I think we might have to do something about this... |
| 10:18 |
|
jonalv |
lots of people will be running Java 6 by now... |
| 10:18 |
|
egonw |
yes, move to Java6 in 2.4 |
| 10:21 |
|
jonalv |
yea |
| 10:22 |
|
egonw |
there are users with only Java5 though... |
| 10:22 |
|
egonw |
or, so I was told... |
| 10:25 |
|
* olass |
is getting tired of writing book chapters and wants to code |
| 10:26 |
|
egonw |
same here |
| 10:26 |
|
egonw |
deadline is today, not? |
| 10:26 |
|
* egonw |
is wrapping up what he has now |
| 11:08 |
|
|
masak joined #bioclipse |
| 13:03 |
|
egonw |
jonalv: merged 2.2.x with master for bioclipse.cheminformatics |
| 13:06 |
|
jonalv |
egonw: dz |
| 13:46 |
|
olass |
where is the CIA bot? |
| 13:52 |
|
egonw |
CIA-71 |
| 13:52 |
|
egonw |
olass: commit messages of large commits never seem to make the bot |
| 13:53 |
|
egonw |
it's a pattern |
| 13:53 |
|
olass |
right |
| 14:26 |
|
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sneumann joined #bioclipse |
| 15:00 |
|
CIA-71 |
bioclipse.core: Carl Masak 2.2.x * r83f481c / (3 files in 2 dirs): |
| 15:00 |
|
CIA-71 |
bioclipse.core: [ScriptingConsolveView] killed off waitUntilCommandFinished |
| 15:00 |
|
CIA-71 |
bioclipse.core: ...and with that, carryOutCommandAndWait. Instead, the command is now |
| 15:00 |
|
CIA-71 |
bioclipse.core: printed *after* it's run, along with its output. That way, we always get |
| 15:00 |
|
CIA-71 |
bioclipse.core: the command printed with its respective output. |
| 15:03 |
|
CIA-71 |
bioclipse.core: Carl Masak 2.2.x * rfbf65bd / plugins/net.bioclipse.scripting.ui/src/net/bioclipse/scripting/ui/views/GroovyConsoleView.java : |
| 15:03 |
|
CIA-71 |
bioclipse.core: [GrooveConsoleView] removed waitUntilCommandFinished |
| 15:03 |
|
CIA-71 |
bioclipse.core: No longer needed since the previous commit. |
| 15:14 |
|
CIA-71 |
bioclipse.core: Carl Masak master * r83f481c / (3 files in 2 dirs): |
| 15:14 |
|
CIA-71 |
bioclipse.core: [ScriptingConsolveView] killed off waitUntilCommandFinished |
| 15:14 |
|
CIA-71 |
bioclipse.core: ...and with that, carryOutCommandAndWait. Instead, the command is now |
| 15:14 |
|
CIA-71 |
bioclipse.core: printed *after* it's run, along with its output. That way, we always get |
| 15:14 |
|
CIA-71 |
bioclipse.core: the command printed with its respective output. - http://bit.ly/72T7zP |
| 15:14 |
|
CIA-71 |
bioclipse.core: Carl Masak master * rfbf65bd / plugins/net.bioclipse.scripting.ui/src/net/bioclipse/scripting/ui/views/GroovyConsoleView.java : |
| 15:14 |
|
CIA-71 |
bioclipse.core: [GrooveConsoleView] removed waitUntilCommandFinished |
| 15:14 |
|
CIA-71 |
bioclipse.core: No longer needed since the previous commit. - http://bit.ly/5Fs2Pd |
| 15:14 |
|
CIA-71 |
bioclipse.core: jonalv master * re6a4aa3 / (4 files in 2 dirs): Merge remote branch 'origin/2.2.x' |
| 15:41 |
|
CIA-71 |
bioclipse.core: Carl Masak 2.2.x * re5cdff3 / plugins/net.bioclipse.scripting.ui/src/net/bioclipse/scripting/ui/views/ScriptingConsoleView.java : |
| 15:41 |
|
CIA-71 |
bioclipse.core: [ScriptingConsoleView] fixed StringIndexOutOfBoundsException |
| 15:41 |
|
CIA-71 |
bioclipse.core: Need to check the position of the string before doing arithmetic on it. - http://bit.ly/6wp3Wt |
| 16:40 |
|
CIA-71 |
bioclipse.core: Carl Masak 2.2.x * r4758dee / plugins/net.bioclipse.scripting.ui/src/net/bioclipse/scripting/ui/views/ScriptingConsoleView.java : |
| 16:40 |
|
CIA-71 |
bioclipse.core: [ScriptingConsoleView] fixed StringIndexOutOfBoundsException |
| 16:40 |
|
CIA-71 |
bioclipse.core: Yes, another one. Yes, very similar to the first one... :/ - http://bit.ly/5IZZjr |
| 16:42 |
|
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egonw joined #bioclipse |
| 17:13 |
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sneumann joined #bioclipse |
| 19:24 |
|
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sneumann_ joined #bioclipse |
| 21:00 |
|
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egonw joined #bioclipse |
| 22:12 |
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CIA-62 joined #bioclipse |
| 22:41 |
|
egonw |
giving up on writing today... first chapter is pretty decent now... |
| 22:41 |
|
egonw |
but second and third really need more work... |
| 22:41 |
|
egonw |
(and all need serious proof reading :( ) |
| 22:43 |
|
egonw |
chapter 3 will be over 20 pages... |
| 22:44 |
|
egonw |
I'm at 18 right now |
| 22:44 |
|
egonw |
chapter 4 is at 4 pages |
| 22:44 |
|
egonw |
as is chapter 7 |
| 22:49 |
|
olass |
egonw: yup, I am going to bed too |
| 22:49 |
|
olass |
good job |
| 22:49 |
|
olass |
g'night |
