Camelia, the Perl 6 bug

IRC log for #bioclipse, 2010-01-22

| Channels | #bioclipse index | Today | | Search | Google Search | Plain-Text | summary

All times shown according to UTC.

Time Nick Message
07:01 annzi joined #bioclipse
08:05 Gpox joined #bioclipse
08:51 mgerlich joined #bioclipse
08:55 egonw joined #bioclipse
09:03 jonalv joined #bioclipse
09:06 egonw moin
09:06 zarah hello egonw, you fantastic person you
09:13 jonalv o/
09:14 jonalv time to fire up Windows and give Bioclipse 2.2.RC3 a spin
09:32 jonalv hm okey we are going to neeed an RC4
09:38 jonalv @pz 1827
09:38 zarah http://pele.farmbio.uu.se/cgi-bi​n/bugzilla/show_bug.cgi?id=1827
09:46 jonalv joined #bioclipse
09:47 jonalv egonw: ping
09:58 egonw pong
10:00 jonalv egonw: have you had time to testrun RC3 on linux? I just did on Karmic using parall;els and I had some problem with clicking on some buttons. For example in the create project dialog. I hope it's a parallels thing...
10:00 egonw nope
10:00 egonw no, that's not a parallels thing
10:00 egonw see the ubuntu wiki page
10:01 jonalv egonw: http://wiki.bioclipse.net/in​dex.php?title=UbuntuKarmic?
10:01 zarah jonalv's link is also http://tinyurl.com/yg4xrc2
10:01 egonw yes
10:01 jonalv it doesn't really mention that problem does it?
10:02 egonw 1.2
10:02 egonw right in the middle
10:02 jonalv egonw: ah it doesn't say anythign about the problem jsut the solution. I see :)
10:03 egonw yes, guilty as charged
10:03 * jonalv can't help thinking this is so bad
10:03 jonalv how did we end up here?
10:03 jonalv we have developers working on Ubuntu nad still lots of haxing is needed to get it to run on the system...
10:03 egonw that's rethorical, right?
10:03 egonw yes, lovely eclipse
10:04 jonalv egonw: it would be really good if this could be in the 2.2 release
10:04 egonw what could be?
10:05 jonalv that script thing bug 1722
10:05 egonw yes, that's what that bug report is about :)
10:06 jonalv egonw: how hard would it be to get an apt repo for bioclipse?
10:07 egonw very difficult
10:07 jonalv it seems libstdc++5 is neeeded too?
10:07 egonw love to see that...
10:07 jonalv egonw: where is the hard parts?
10:07 egonw packaging everything
10:07 egonw yes, libstdc++5 is need for InChI to work
10:08 de__maas joined #bioclipse
10:08 jonalv okey so our linux users are in for a bumpy ride...
10:08 egonw yes, likely
10:09 egonw hi de__maas!
10:09 * egonw is in Eindhoven :)
10:11 de__maas egonw: How nice, just visiting?
10:11 egonw yeah, got a wedding to attend today :)
10:11 de__maas Shouldn't you get ready in steady of working?
10:12 egonw yeah, preparing the slide show...
10:12 egonw I'm not the one who is getting married...
10:12 de__maas Aha, that save time indeed ;-)
10:12 egonw "dat scheelt a slok op een borrel"
10:12 de__maas LOL
10:12 de__maas Just a quick question then?
10:12 egonw you're here for RC3 bug reports?
10:12 egonw sure :)
10:13 de__maas I wanted to ask whether people are still putting javascript for bioclipse in myexperiment and gist hub
10:13 de__maas I only found 10 or so.
10:13 egonw yes
10:13 egonw but not so many as before...
10:13 egonw I think we need another workshop :)
10:13 egonw and not all gists have been ported to myexperiment
10:14 de__maas What is the preferred site
10:14 egonw good question
10:14 de__maas Also only found 3 hits one delicious.
10:14 egonw personally...
10:14 egonw I put up things now on myexperiment
10:15 de__maas Maybe we should push everybody a bit to do this as well (including me ;-).
10:16 egonw :)
10:16 de__maas I just received a mail where they put bioclipse forward as an alternative to pipeline pilot.
10:16 egonw can you file a bug report about this?
10:16 egonw then we can discuss this for 2.4
10:16 egonw olas is not online now it seems
10:16 egonw de__maas: huh??
10:17 de__maas Sure , if you think that helps.
10:17 egonw well, to some extend...
10:17 egonw not to most immediate comparison I'd make...
10:18 de__maas Yes, I've explained it to them what it does and what it doesn't. I pointed them to the script console and obviously they were a bit scared which is why I wanted to show them examples on myExperiment...
10:18 egonw indeed
10:19 egonw jonalv: those people would greatly benefit from the recording!
10:19 jonalv egonw: yea indeed
10:20 de__maas OK, I'll file bug report, open an account on myExperiment and point them to it. Are we promoting delicious indexing?
10:20 egonw for MyExperiment that is not needed...
10:20 egonw as ME has itself tagging
10:20 egonw and you can even search workflows using the myexperiment manager
10:20 egonw but there is no GUI yet...
10:20 egonw 2.4 I hope
10:21 de__maas Agreed, but that should be communicated then as well (or rather discommunicated)
10:22 de__maas BTW, I also recommended them to wait for the 2.3 final release
10:22 egonw 2.2.0 will be the final of the 2.1.x series
10:23 egonw 2.3 final will be 2.4.0
10:23 egonw we use the devel versions as x.odd
10:23 egonw stable bug fix releases are x.even
10:23 de__maas no worries, I think I wrote next final release
10:24 jonalv yea that will be 2.2 real-soon-now™
10:24 egonw :)
10:24 egonw de__maas: have you tried RC3 yet?
10:25 egonw if so, how does it feel?
10:25 egonw compared to 2.0?
10:26 jonalv @pz 1827
10:26 zarah http://pele.farmbio.uu.se/cgi-bi​n/bugzilla/show_bug.cgi?id=1827
10:26 de__maas To be honest, I'm still on 2.0.1 :-(
10:26 egonw :)
10:27 egonw well, it *is* the stable release
10:27 jonalv http://pele.farmbio.uu.se/cgi-bi​n/bugzilla/show_bug.cgi?id=1827
10:27 zarah jonalv's link is also http://tinyurl.com/ycrf3me
10:28 jonalv de__maas: what operating system are you running?
10:29 de__maas Vista 64-bits  and red hat
10:30 jonalv okey, well to be honest I think RC3 only works flawless on Mac's for the moment
10:31 de__maas Isn't that a phone ;-)
10:32 de__maas Actually I'm always surprised when something does run on my vista 64-bits .
10:38 samuell joined #bioclipse
10:43 egonw http://developers.slashdot.org/story/10​/01/21/215212/MIT-Offers-Picture-Centri​c-Programming-To-the-Masses-With-Sikuli
10:43 zarah egonw's link is also http://tinyurl.com/yep5s8d
11:49 egonw OK, going offline now, for the rest of the day...
11:49 egonw bye all
12:05 de__maas left #bioclipse
12:20 masak joined #bioclipse
12:42 jonalv Gpox: I have a big complicated molecuel open in JChempaint and I want to hae colored circels instead of letters. How do I do that?
12:43 jonalv Gpox: can it be done?
12:44 Gpox I am checking now
12:45 Gpox jcp.setIsCompact(true)
12:46 jonalv cool
12:46 jonalv Gpox++
12:46 jonalv I like this it's almost like linux but you configure thigns from the JS-console instead
12:47 jonalv now if we could get them as circles instead of squares...
12:47 jonalv or maybe I shouldn't push it? :)
12:48 Gpox one moment
12:48 jonalv Gpox: you can do that too?
12:50 Gpox it is in JChemPaint but youcant get the renderermodel from the jcp manager
12:50 jonalv Gpox: okey well this is good wnough for me. thanks
15:33 samuell joined #bioclipse
16:22 sneumann joined #bioclipse
18:28 sneumann joined #bioclipse
22:07 sneumann joined #bioclipse

| Channels | #bioclipse index | Today | | Search | Google Search | Plain-Text | summary