Camelia, the Perl 6 bug

IRC log for #bioclipse, 2010-02-17

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All times shown according to UTC.

Time Nick Message
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10:23 annzi egonw: when running sparqlRemote queries the output is saved into a List<ArrayList>, what determines the order of data in the arraylist?
10:23 annzi is it something that can be manipulated?
10:23 egonw it should be determined by the order of the variables in the SPARQL query
10:24 egonw but I agree this needs patching to use a Map or so...
10:24 egonw dunno about the best format...
10:25 egonw Map<String,List<String>> would record the column names, but the triple structure is lost
10:25 annzi but it is not controlled by the order of variables, unfortunately
10:25 egonw List<Map<String,String>> would keep that structure, but sounds rather inefficient
10:25 egonw annzi: no, that's my experience too...
10:25 egonw annzi: sometimes it is, sometimes not...
10:26 egonw can't rely on it, it seems :(
10:26 egonw so, we need this map hack
10:26 annzi and it is really hard trying to obtain compounds for moss if I can't control the outcome
10:26 egonw yes, I understand...
10:26 egonw file me a bug report
10:26 annzi unless there is a way to parse smiles
10:27 annzi then the order would not matter
10:27 egonw I put it on my schedule for Friday ...
10:27 egonw cdk.fromSMILES(smiles)
10:27 annzi that one creates a imolecule right, I would like a boolean method
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