Camelia, the Perl 6 bug

IRC log for #bioclipse, 2010-03-12

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All times shown according to UTC.

Time Nick Message
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09:13 olass egonw__: ping
09:14 olass hmm, nvm
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09:15 olass egonw__: ping
09:16 olass how can I programmatically get the version of CDK we are running? is it enough to read the plugin version of some org.openscience.cdk plugin?
09:18 jonalv egonw__: I will not be able to attend on the 25:th :(
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10:23 egonw__ olass: yes
10:23 egonw__ jonalv: :(
10:24 olass egonw__: how?
10:24 olass_______ egonw__: I have more underscores than you
10:24 olass_______ lol
10:25 egonw olass_______: show off!
10:25 egonw your's is longer than mine! hahahaha
10:25 olass \o/
10:25 olass what plugin should I read version from?
10:26 egonw org.openscience.cdk.standard I'd suggest
10:26 olass ok
12:32 olass @tell egonw Could you have a look at bug 1440 for the BODO docu?
12:32 zarah Consider it noted.
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13:22 jonalv olass: ping
13:24 olass pong
13:24 jonalv olass: I am havign strange experience with QSAR plguin
13:24 olass is that so?
13:25 jonalv olass: does everything freeze up an crash for you when you turn on auto build?
13:25 olass not tried it in a long time
13:25 olass pastebin of stacktrace?
13:25 jonalv I get: org.osgi.framework.BundleException: State change in progress for bundle "reference:file:/Users/jonathan/Work/git/githu​b/bioclipse.core/plugins/net.bioclipse.core/" by thread "Worker-0".
13:25 olass tested autobuild, seems to work here
13:26 jonalv olass: http://pastebin.com/b24R6T3v
13:27 olass well, I see some strange things here too... autobuild does not seem to run properly for me
13:27 olass (maybe I should turn that feature off for now?)
13:28 olass are you sure those errors are from qsar?
13:28 olass first one is core
13:28 olass second is class "net.bioclipse.core.util.IJav​aScriptConsolePrinterChannel
13:29 olass seems to be some deadlock issue
13:30 olass I see no reference to QSAR at all in stacktrace
13:30 jonalv olass: well I only get that when running QSAR
13:30 jonalv olass: but no I have no idea of why I actually get it...
13:30 jonalv olass: but at least you dont?
13:31 olass nope
13:32 jonalv olass: on the other hand I don't seem to get the error related to the manager not being ready during auto build...
13:32 jonalv olass: do you get that?
13:32 olass no
13:32 jonalv olass: you said it doesnt work proeprly for you. What error do you get then?
13:33 olass I don't get any error now as I switched it off
13:33 olass (I told you already)
13:33 jonalv olass: but if you swtich it on...
13:33 olass I can try...
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13:43 olass jonalv: sorry, I can't reproduce
13:43 olass I might have added some magic to avoid this
13:44 olass can't remember
13:44 jonalv olass: so I can close that bug then?
13:44 olass and can't figure out how
13:44 olass what bug?
13:44 jonalv @pz 1443
13:44 zarah http://pele.farmbio.uu.se/cgi-bi​n/bugzilla/show_bug.cgi?id=1443
13:44 olass jonalv: are managers initialized in background then?
13:44 jonalv olass: I have made a fix for JS trouble
13:44 olass ok
13:44 olass I am happy with that
13:45 olass if the autobuild problem reappears, let's tackle that then
13:45 jonalv olass: I can not test run your QSAR project, it crashes Bioclispe every other time I start
13:45 olass strange
13:45 jonalv olass: I really wonder what you are doing in the plguin...
13:45 olass jonalv: check, it is open source :)
13:45 jonalv olass: you know I think I will\
13:45 jonalv :)
13:46 olass seriously, I'd be happy if you could locate the problem...
13:46 olass but I don't have it and it's hard to debug then
13:46 jonalv olass: yea I know... :)
13:48 CIA-60 bioclipse.qsar: Ola Spjuth master * raa79b83 / plugins/net.bioclipse.qsar.ui/src/net/bioc​lipse/qsar/ui/editors/DescriptorsPage.java : Implemented a warning message if duplicate descriptors are selected. - http://bit.ly/dsg4y0
13:48 CIA-60 bioclipse.qsar: Ola Spjuth master * rad6368b / plugins/net.bioclipse.cdk.qsar/src/net/bioclip​se/cdk/qsar/impl/CDKDescriptorCalculator.java : Catch error if resultlables and/or resultvalues in CDK are null. - http://bit.ly/97bTNz
13:49 CIA-60 bioclipse.core: jonalv master * r54bf46e / plugins/net.bioclipse.scripting/src/n​et/bioclipse/scripting/JsThread.java :
13:49 CIA-60 bioclipse.core: make JSThread.busy==true before started up
13:49 CIA-60 bioclipse.core: This means that it won't try to get manager names if tab completing during initialization at startup. Fixes bug: 1443. - http://bit.ly/aEwhfm
13:49 zarah bug #1443 | http://tinyurl.com/yzn393r
13:53 jonalv olass: can you point me to the code that fixes the autobuild? Is it located in some Activator.start per chance?
14:07 * jonalv reboots this peace of shit. bbl
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14:23 HerNasseMedNesan Thanks god it's friday
14:52 egonw annzi, HerNasseMedNesan: you got blog comment
14:52 zarah egonw: You have new messages. Write '/msg zarah @messages' to read them.
14:52 egonw @msg
14:52 zarah egonw: 2 h 19 m 34 s ago, olass said Could you have a look at bug 1440 for the BODO docu?
14:52 annzi @msg
14:52 zarah annzi: You have no new messages.
14:54 HerNasseMedNesan egonw: oh I can haz link plz?
14:56 egonw http://uucheminfoclub.blogspot.com/2010/0​3/review-of-towards-pharmacogenomics.html
14:56 zarah egonw's link is also http://tinyurl.com/ygadb5r
14:58 olass HerNasseMedNesan: MrNaziWithTheNose?
14:58 olass please, english in this ch
14:58 HerNasseMedNesan olass: I am speaking english in this channel
14:58 olass MrNaziWithTheNose: I see
14:59 HerNasseMedNesan besides it's a pig noose not a nazi
14:59 olass MrNaziWithTheNose: ok
14:59 HerNasseMedNesan olass: so please stope refering to nazis would you? :)
14:59 olass MrNaziWithTheNose: sure
14:59 HerNasseMedNesan olass: you are not doing it
15:00 olass MrNaziPigWithTheNose
15:00 annzi olass: it could also be MrPigletWithTheNose :)
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