Camelia, the Perl 6 bug

IRC log for #bioclipse, 2010-04-06

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All times shown according to UTC.

Time Nick Message
05:13 sneumann joined #bioclipse
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06:58 egonw moin
07:09 mgerlich joined #bioclipse
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07:20 * egonw is splitting up CDK-JChemPaint commits, do make a cleaner patch set...
07:20 sneumann joined #bioclipse
07:20 egonw Gpox: tip
07:20 egonw $ cd src/main
07:20 egonw $ cat ../../build/render.javafiles | xargs git add
07:20 egonw $ git commit -m "The part for the render module"
07:21 egonw $ cat ../../build/renderbasic.javafiles | xargs git add
07:21 egonw $ git commit -m "The part for the renderbasic module"
07:21 egonw well, I keep the commit messages identical, and made them above reflecting what they submit
07:21 egonw and make sure to do a 'ant runDoclet'
07:21 egonw to ensure the build/*.javafiles are up to date
07:21 Gpox egonw: intresting
07:24 s_wolf joined #bioclipse
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07:35 wagener moin
07:38 sneumann moin!
07:38 sneumann Zarah still on holidays ?
07:38 sneumann I miss her somedays
07:40 edrin I think she was killed in a recent riot in Cameroon.
07:54 zarah joined #bioclipse
07:55 egonw hi zarah
07:55 sneumann moin!
07:55 zarah hi sneumann
07:55 sneumann ;-)
07:57 edrin oh!
07:59 masak joined #bioclipse
08:22 CIA-22 bioclipse.cheminformatics: Arvid Berg 2.4.x * r3ba26d9 / (2 files): Fix for outline when opening with structureDB - http://bit.ly/ayCTQV
08:22 CIA-22 bioclipse.cheminformatics: Arvid Berg 2.4.x * r3ccbc4c / (3 files in 2 dirs): Enabled drag from MolTable - http://bit.ly/d2fxIQ
08:22 CIA-22 bioclipse.cheminformatics: Arvid Berg 2.4.x * rbf8ace0 / plugins/net.bioclipse.cdk.ui.sdfed​itor/src/net/bioclipse/cdk/ui/sdfe​ditor/editor/MoleculesEditor.java : Removed trailing space - http://bit.ly/94EWwx
08:22 CIA-22 bioclipse.cheminformatics: Arvid Berg 2.4.x * raca6f2c / (4 files in 2 dirs):
08:22 CIA-22 bioclipse.cheminformatics: Added manager metod for saving a MoleculesEditorModel to CSV file
08:22 CIA-22 bioclipse.cheminformatics: Also published createIndex() to be able to get a model to save
08:22 CIA-22 bioclipse.cheminformatics: Solves bug 1916 - http://bit.ly/9vDmhE
08:22 CIA-22 bioclipse.cheminformatics: Arvid Berg 2.4.x * r1dc193a / plugins/net.bioclipse.cdk.ui.sdfedi​tor/src/net/bioclipse/cdk/ui/sdfedi​tor/editor/MolTableSelection.java : Fixed iterator for MolTableSelection - http://bit.ly/cxomkv
08:22 zarah bug #1916 | http://tinyurl.com/y9dtt9t
08:42 egonw Gpox: ping
08:42 Gpox egonw: pong
08:42 egonw I just realized something cool
08:42 egonw well, I think it would be cool
08:42 egonw right now, we have AtomContainerRenderer and Renderer
08:42 egonw I will actually factor out ReactionRenderer, I think...
08:43 egonw anyway... I was refactoring IGenerator a bit...
08:43 egonw as we had IGenerator for IAtomContainer and IReactionGenerator for IReaction
08:44 egonw we should be able to use that generics thing too, not?
08:44 egonw IGenerator<T> or something?
08:44 egonw with paint(T)
08:44 Gpox yes
08:44 egonw and likewise for IRenderer
08:44 egonw IRenderer<T>
08:45 egonw so that AtomContainerRenderer extends IRenderer<T>
08:45 jkutzer joined #bioclipse
08:45 egonw well, something like that
08:45 egonw I'm sure I'm getting some details wrong here :)
08:45 egonw anyway... for later
10:57 edrin_ joined #bioclipse
11:49 jonalv joined #bioclipse
11:49 jonalv oh hai
11:49 zarah hello jonalv, you fantastic person you
12:11 egonw hi jonalv
12:11 jonalv hi egonw
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12:56 olass o/
13:11 egonw hi olass
13:13 olass hi egonw
13:22 samuell hi olass and egonw
13:24 Gpox bye olass, egonw and samuell
13:25 egonw :)
13:37 olass bye Gpox
13:48 egonw amazing... I just found a cloning bug in MoleculeSet which must have been there for ages
13:49 egonw the bug was boring and nasty
13:49 egonw MoleculeSet is, well... interesting...
13:50 egonw that the bug was there probably since 2000 is amazingly scary
13:51 egonw olass: if only the Pharm Bioinfo course was a bit more about programming...
13:51 egonw the CDK would make excellent exercises
13:51 egonw task 1: write a unit test for the core classes
13:51 egonw task 2: file a bug report for the problem you found with the random unit test you wrote in task 1
14:22 egonw jackpot
14:22 egonw the first new unit test I write
14:22 egonw and I hit a bug
14:22 egonw fuck, fuck, fuck, fuck
14:23 egonw why, oh why...
14:23 egonw time for coffee
14:24 egonw olass: if we had plenty of resources, I strongly suggest extra manpower on the CDK part of Bioclipse...
14:24 egonw so bloody much to fix
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