Camelia, the Perl 6 bug

IRC log for #bioclipse, 2010-04-23

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All times shown according to UTC.

Time Nick Message
05:01 egonw joined #bioclipse
05:48 egonw joined #bioclipse
06:03 egonw moin
06:03 zarah privet egonw
06:03 Gpox joined #bioclipse
06:37 sneumann joined #bioclipse
07:38 olass joined #bioclipse
07:58 edrin hi
07:58 jonalv joined #bioclipse
07:58 zarah privet edrin
08:18 egonw good...
08:19 egonw another day of CDK hacking
08:19 egonw good few patches applied yesterday afternoon
08:19 egonw still waiting for one important patch to be reviewed and applied...
08:34 jpansanel moin
08:34 zarah ni hao jpansanel
08:34 jonalv oh hai
08:34 zarah ni hao jonalv
08:35 * jonalv got Ubuntu with Bioclispe Brunn up and running on a virtual box now o/
08:35 egonw jonalv++
08:35 * egonw suggests to make that an image, that people can download
08:36 egonw make it single-auto-login
08:36 egonw Brunn icon on the desktop
08:36 jonalv egonw: yea that's the plan
08:36 egonw cool
08:36 egonw jonalv++
08:36 egonw jonalv++
08:36 jonalv egonw: only there is no brunn icon and no Bioclipse icon at the mometn either :(
08:37 egonw brunn--
08:37 egonw bioclipse--
08:37 jonalv hm or maybe masak++ actually did a brunn icon once...
08:38 jonalv question though if the icon on the desktop shouldn't be a Bioclispe icon?
08:38 olass egonw (or anyone else): a linux question.
08:38 olass I want to search for a file with name *.pdf recursively, starting from where I stand, and pipe the results to scp
08:39 egonw find . -name "*.pdf"
08:39 olass find *.pdf . | scp ola@my.server.com
08:39 olass and the piping?
08:39 egonw yeah, thinking...
08:39 egonw something with xargs
08:39 egonw momo
08:39 egonw mom
08:40 jonalv find syntax uses regexes. It's über complicated
08:40 egonw try this instead...
08:40 egonw using backticks
08:40 egonw scp `find . -name "*.pdf"` ola@my.server.com
08:40 egonw scp `find . -name "*.pdf"` ola@my.server.com:~/.
08:41 olass http://superuser.com/questions/51330/i-would-like-​to-pipe-output-of-find-into-input-list-of-scp-how
08:41 zarah olass's link is also http://tinyurl.com/zbzbix
08:41 olass egonw: ah
08:41 egonw yeah, that first answer is good too
08:41 egonw using -exec
08:41 egonw not so much practice with that myself
08:42 olass I like this: scp $(find . -name "*") phogan@computer:/directory...
08:42 egonw that's a syntax I do not recognize
08:42 olass me neither
08:42 olass looks powerful
08:42 olass will try it :)
08:43 olass works like a charm
08:46 egonw cool
08:52 jonalv hm the export is about 2 GB... :/
08:55 egonw sure
08:55 egonw biotorrent.org
08:55 jonalv + multiple files
08:56 jonalv egonw: torrents? uhm no way to get enough seeeders
08:56 egonw why not?
08:56 jonalv unless I bribe some friend
08:56 jonalv egonw: how many is needed?
08:56 egonw anyway... one seed, one ftp site
08:56 egonw does it matter?
08:57 egonw biotorrent provides one, one on pele ?
08:57 jonalv egonw: sounds like a plan
08:58 egonw http://www.biotorrents.net/
08:58 egonw .net, not .org
08:59 egonw olass: btw, keep forget asking... what's the state of github.com/bioclipse ?
09:03 * jonalv removes unneded stuff like f-spot and similar stuff
09:03 egonw :)
09:04 egonw and wesnoth
09:04 jonalv open office
09:05 jonalv egonw: what's that btw?
09:06 egonw dunno... I saw something about editing it being used to edit chemistry papers with molecules... but not sure
09:07 egonw but openoffice is likely some cheap MS-Office rip off
09:07 jonalv egonw: no I meant wesnoth, what's that?
09:07 egonw http://www.wesnoth.org/
09:08 jonalv egonw: does ubuntu ship with THAT?
09:08 egonw hope so... why do you think I am working from home.... ummm... oops... :)
09:09 jonalv The program 'wesnoth' is currently not installed.  You can install it by typing:
09:09 jonalv sudo apt-get install wesnoth-core
09:09 jonalv so no
09:09 olass egonw: have not had time yet , sorry
09:09 olass hopefully soon
09:09 * olass is in tel
09:10 jonalv when is olass not in tel?
09:10 egonw tel is short for wesnoth?
09:10 olass too many people calling me!
09:10 jonalv egonw: is that game any good?
09:11 egonw jonalv: graphically not pleasing... but good story lines... fun play
09:11 egonw give it a try
09:11 jonalv zarah: tell me
09:11 olass any idea how masak's GsoC proposal turned out?
09:11 zarah jonalv: 16 h 40 m 22 s ago, notjonalv said /net.bioclipse.ui/icons/molecule3D.xp
09:11 zarah jonalv: 16 h 40 m 20 s ago, Gpox said /net.bioclipse.ui/icons/molecule3D.xpm
09:12 jonalv olass: nope I haven't heard anything
09:12 egonw olass: what is blocking starting using it? we just have to make clones, assign write access, and give people a notice to update the repos, not?
09:12 egonw deadline for voting was yesterday
09:12 egonw news should be out shortly
09:13 jonalv Gpox: that wasn't the Bioclispe logo
09:17 Gpox no that is what the bioclipse product sets as an icon on linux
09:18 jonalv Gpox: oh that's firstly bad seconldy not what I see in 2.2
09:22 jonalv olass: however masak has not turned up ywt which could be interpreted as he got it and he was up celebrating yesterday
09:22 jonalv olass: then again it could also mean he did not get it I guess...
09:22 jonalv :)
09:32 sneumann joined #bioclipse
09:55 egonw_ joined #bioclipse
10:00 masak joined #bioclipse
11:24 jonalv zarah: seen olass
11:25 zarah olass was last seen 1 h 8 m 47 s ago in #farmbio saying 'stortå ~ tumme'
11:25 jonalv huh?
11:35 samuell joined #bioclipse
12:18 olass joined #bioclipse
14:10 CIA-61 bioclipse.ds: Ola Spjuth master * rd862eed / plugins/net.bioclipse.ds.birt​/reports/ds-single.rptdesign :
14:10 CIA-61 bioclipse.ds: Updated report name.
14:10 CIA-61 bioclipse.ds: New name: "Chemical liability report". - http://bit.ly/b8ozaz
14:10 CIA-61 bioclipse.ds: Ola Spjuth master * r2510eaa / (13 files in 8 dirs):
14:10 CIA-61 bioclipse.ds: Updated SuibStructureMatch to use list<Integer>.
14:10 CIA-61 bioclipse.ds: This avoids cloning obstacles. - http://bit.ly/bRy4pf
14:10 olass *puh*
14:17 herNasseMedNesan I can haz friday?
14:20 herNasseMedNesan ping
14:20 masak herNasseMedNesan: you can haz! \o/
14:20 herNasseMedNesan \o/
14:21 CIA-61 bioclipse.cheminformatics: Ola Spjuth 2.4.x * r5097cc1 / plugins/net.bioclipse.cdk.ui.sdfedit​or/src/net/bioclipse/cdk/ui/sdfedito​r/business/MoleculeTableManager.java :
14:21 CIA-61 bioclipse.cheminformatics: Fix for Java 1.5 syntax.
14:21 CIA-61 bioclipse.cheminformatics: Signed-off-by: Egon Willighagen <egon.willighagen@gmail.com> - http://bit.ly/9VtHKA
15:12 CIA-61 bioclipse.ds: Ola Spjuth master * rb38b75f / (25 files in 15 dirs):
15:12 CIA-61 bioclipse.ds: Replaced lipinsky plugin with an ADME plugin.
15:12 CIA-61 bioclipse.ds: Also fixed some NPE when no tests in Endpoint. - http://bit.ly/dnzV4N
16:43 egonw joined #bioclipse
20:05 sneumann joined #bioclipse

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