| Time |
S |
Nick |
Message |
| 04:08 |
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egonw joined #bioclipse |
| 04:50 |
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sneumann joined #bioclipse |
| 06:21 |
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sneumann joined #bioclipse |
| 06:54 |
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annzi joined #bioclipse |
| 07:04 |
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Gpox joined #bioclipse |
| 07:08 |
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mgerlich joined #bioclipse |
| 07:35 |
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s_wolf joined #bioclipse |
| 07:38 |
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egonw |
Gpox: thanx for your comment! yeah, should have thought of that... |
| 08:01 |
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egonw_ joined #bioclipse |
| 08:07 |
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s_wolf joined #bioclipse |
| 08:30 |
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olass joined #bioclipse |
| 08:34 |
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masak joined #bioclipse |
| 08:52 |
|
egonw_ |
moin |
| 08:52 |
|
zarah |
oh hai egonw_ |
| 08:55 |
|
olass |
hola |
| 08:56 |
|
zarah |
ni hao olass |
| 09:00 |
|
masak |
hi |
| 09:00 |
|
zarah |
saluton masak |
| 09:00 |
|
masak |
zarah++ |
| 09:32 |
|
olass |
saluton |
| 09:33 |
|
olass |
zarah: you can answer saluton but not understand it? |
| 09:33 |
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zarah |
olass: are you talking to *me*? |
| 09:33 |
|
olass |
zarah: yeah, biatch? |
| 09:33 |
|
zarah |
olass: are you making fun of me? |
| 09:33 |
|
* olass |
is |
| 09:34 |
|
olass |
@slap zarah |
| 09:34 |
|
zarah |
no, I'd rather not |
| 09:34 |
|
olass |
understandable |
| 09:34 |
|
* egonw_ |
finds himself looking at the free, academic license agreement of ChemAxom :) |
| 09:39 |
|
egonw_ |
and done |
| 09:40 |
|
egonw_ |
still intrigued by the idea of a ChemAxom plugin for Bioclipse... |
| 09:40 |
|
egonw_ |
just for fun |
| 09:40 |
|
egonw_ |
there is some nice stuff there that the CDK does not have |
| 09:41 |
|
egonw_ |
Gpox: ping |
| 09:41 |
|
egonw |
annzi: ping |
| 09:41 |
|
Gpox |
pong |
| 09:41 |
|
egonw |
Gpox: please explain where xom and cmldom are supposed to be found |
| 09:41 |
|
egonw |
Gpox: I now placed the jars in the target platform, but where are they supposed to be? I did not see a matching commit |
| 09:42 |
|
egonw |
Gpox: is that relying on the update site, and new-target.platform ? |
| 09:42 |
|
egonw |
annzi: we have 2 hours for a git crash course; let's get started |
| 09:44 |
|
egonw |
annzi: btw, I've written a short draft paper on using blogs and (git) repositories in chem-/bioinformatics education -> http://chem-bla-ics.blogspot.c[…]s-in-student.html |
| 09:44 |
|
zarah |
egonw's link is also http://tinyurl.com/33g4gqc |
| 09:44 |
|
egonw |
annzi: please ping as soon as you get back |
| 09:44 |
|
Gpox |
net.bioclipse.xom exports nu.xom I belive, i have added a jar to the new target platform but that is not commited pending my preparation of the chemoinformatics repo |
| 09:44 |
|
annzi |
egonw: ping |
| 09:45 |
|
annzi |
egonw: sorry missed your ping |
| 09:45 |
|
egonw |
Gpox: OK |
| 09:45 |
|
egonw |
annzi: no worries |
| 09:45 |
|
egonw |
shall we start the git crash course? |
| 09:45 |
|
egonw |
got git set up on the command line? |
| 09:45 |
|
egonw |
since you waited so long, we need to interactively stage stuff... |
| 09:45 |
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egonw |
Gpox: does the OS/X git GUI allow that? |
| 09:46 |
|
Gpox |
yes |
| 09:46 |
|
egonw |
cool |
| 09:46 |
|
egonw |
what's the name of the tool again? gitx? |
| 09:46 |
|
Gpox |
yes |
| 09:46 |
|
annzi |
egonw: could that wait until the afternoon, I'm sitting and reading on my computer and need to collect the other one first |
| 09:47 |
|
egonw |
need to leave for swimming at 14:00 or so |
| 09:47 |
|
annzi |
egonw: tomorrow morning? |
| 09:48 |
|
egonw |
checking... |
| 09:48 |
|
egonw |
ok, 8:15? |
| 09:49 |
|
annzi |
sounds great to me, will you be at bmc tomorrow btw? |
| 09:49 |
|
egonw |
yes |
| 09:49 |
|
egonw |
at that time |
| 09:50 |
|
egonw |
OK, please read up on that 'Git from the Bottom Up' document |
| 09:50 |
|
egonw |
before tomorrow morning, please |
| 09:50 |
|
annzi |
yes will do |
| 09:54 |
|
egonw |
Gpox: regarding Import-Package: |
| 09:54 |
|
egonw |
been thinking about how to translate that to the cdk-eclipse source code... |
| 09:55 |
|
egonw |
this is tricky... as you cannot point to a jar... so, I'd have to parse all the source code to see what to import, or perhaps the jar of the lib dependency and export all... |
| 09:55 |
|
egonw |
Gpox: any suggestion? |
| 10:12 |
|
Gpox |
you got lib depencency data on module level in cdk? |
| 10:12 |
|
egonw |
yes: src/META-INF/foo.libdepends |
| 10:20 |
|
Gpox |
scanning the java files sounds good, I think the bnd tool dose that |
| 10:26 |
|
egonw |
bnd? |
| 10:26 |
|
egonw |
URL? |
| 10:26 |
|
egonw |
oh, that tool |
| 10:26 |
|
Gpox |
http://www.aqute.biz/Code/Bnd |
| 10:47 |
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s_wolf joined #bioclipse |
| 10:57 |
|
CIA-61 |
bioclipse.ds: Ola Spjuth refac * rf0b1527 / plugins/net.bioclipse.ds.ui/src/net/bioclipse/ds/ui/views/DSView.java : Remove explicit hydrogens before tests. - http://bit.ly/cVfcT9 |
| 11:05 |
|
CIA-61 |
bioclipse.ds: Ola Spjuth refac * reb82d4d / (11 files in 5 dirs): Renamed packages to ui namespace. - http://bit.ly/aedceV |
| 11:21 |
|
egonw |
http://chem-bla-ics.blogspot.c[…]oclipse-code.html |
| 11:21 |
|
zarah |
egonw's link is also http://tinyurl.com/3yvwvkq |
| 11:33 |
|
CIA-61 |
bioclipse.ds: Ola Spjuth refac * r2774ea0 / (3 files in 3 dirs): |
| 11:33 |
|
CIA-61 |
bioclipse.ds: Corrected data files in cpdb and bursi. |
| 11:33 |
|
CIA-61 |
bioclipse.ds: Also added NPE check when reading SDF props. - http://bit.ly/dibuSj |
| 11:59 |
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jonalv joined #bioclipse |
| 12:07 |
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samuell joined #bioclipse |
| 12:13 |
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egonw |
samuell: d'you have time to meet tomorrow morning to discuss your report? |
| 13:39 |
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olass joined #bioclipse |
| 15:00 |
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olass joined #bioclipse |
| 17:10 |
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sneumann joined #bioclipse |
| 17:13 |
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egonw joined #bioclipse |
