Camelia, the Perl 6 bug

IRC log for #bioclipse, 2010-05-21

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All times shown according to UTC.

Time Nick Message
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07:09 egonw moin
07:09 zarah hi egonw
07:53 sneumann morning
07:58 sneumann morning!
07:58 sneumann good morning!
07:58 sneumann moin
07:58 zarah oh hai sneumann
07:58 sneumann ah, thank you zarah
08:28 annzi joined #bioclipse
08:41 egonw hi sneumann
08:41 egonw sneumann: back from cambridge?
09:01 sneumann hi egonw, yes everything went fine,
09:01 sneumann no ashes in the way :-)
09:01 egonw :)
09:01 egonw did you also put your slides online?
09:01 egonw like Rajarshi?
09:01 sneumann nope, some of them are also / mostly done by e.g. Ralf,
09:02 sneumann and we might some day come around to put them on XCMS sites
09:10 sneumann 20.05.2010 10:25 Google I/O: Wave nun offen für Jedermann
09:10 sneumann http://www.heise.de/newsticker/meldung/Google-​I-O-Wave-nun-offen-fuer-Jedermann-1003966.html
09:10 zarah sneumann's link is also http://tinyurl.com/38sgln5
09:10 egonw indeed
09:10 egonw no need anymore for my 25 left invites
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12:13 egonw annzi: ping
12:13 egonw annzi: got time for some more git learning curve?
12:16 annzi egonw: I'm working with git now
12:16 annzi so it would be perfect
12:17 egonw good
12:17 egonw ok, go to this page:
12:17 egonw http://github.com/annzi/bioclipse.chembl
12:17 zarah egonw's link is also http://tinyurl.com/3xbuu7n
12:17 annzi *have not rebased anything yet though*
12:17 egonw and click the 'Fork Queue' link
12:18 annzi done
12:19 egonw do you see my commits?
12:19 annzi yes
12:19 egonw those I made to my 'fork'?
12:19 egonw good
12:19 egonw use the checkboxes to mark the oldest
12:19 egonw one commit
12:20 egonw and select apply
12:20 egonw or something
12:20 egonw and see what happes
12:20 annzi oldest of mine?
12:20 egonw +n
12:21 egonw yes, the oldest
12:21 egonw they are all yours
12:21 annzi I can see yours and ola as well
12:22 annzi but with that answer I guess I should pick mine :)
12:22 egonw pick the oldest
12:22 egonw that's what matters
12:23 annzi so I simply update the branch..
12:23 egonw yes
12:24 annzi cool
12:24 CIA-72 bioclipse.chembl: Egon Willighagen master * rb2c2c94 / (13 files in 6 dirs): Added the ChEMBL manager to return the QSAR data for a particular target from ChEMBL - http://bit.ly/bnNeEd
12:24 CIA-72 bioclipse.chembl: annzi master * rf23b288 / plugins/net.bioclipse.chembl.ui/src/net/b​ioclipse/chembl/ui/wizard/ChemblData.java : Class with a data model that stores values from the wizard - http://bit.ly/akw8vL
12:25 egonw annzi++
12:25 egonw ok, now pay attention to the commits turning green and red
12:25 egonw and make sure to try to apply them in the correct order
12:27 annzi oh so you mean that I have to go trough them all..so I simply apply the next red one
12:27 annzi ?
12:28 egonw well, ideally next 'green' one
12:28 egonw but do them all
12:28 egonw they will apply
12:28 egonw not sure what GitHub does to get it wrong
12:28 egonw as long as you keep the order properly
12:28 annzi and that would be the order they turn up on the screen
12:29 egonw check the dates
12:29 egonw note that there are two batches
12:29 egonw one for each plugin: chembl and chembl.ui
12:29 egonw but within each batch, they are ordered in time
12:30 annzi yes, so it is the time you are reffering?
12:32 egonw when the commit was created
12:34 CIA-72 bioclipse.chembl: Egon Willighagen master * r88bac85 / (2 files): Now removes NaN values, and entries without SMILES (fixes #1912) - http://bit.ly/apYW1m
12:34 zarah bug #1912 | http://tinyurl.com/yat544e
12:36 CIA-72 bioclipse.chembl: Egon Willighagen master * ra16f6b8 / plugins/net.bioclipse.chembl/META-INF/MANIFEST.MF : Depend on Java5 not Java6 (fixes #1911) - http://bit.ly/ajwNfC
12:36 zarah bug #1911 | http://tinyurl.com/y95zd8d
12:36 CIA-72 bioclipse.chembl: Ola Spjuth master * r841a9ca / plugins/net.bioclipse.chembl/.classpath : Added stax jar and exported packages. Solves #1906. - http://bit.ly/arQTqb
12:37 CIA-72 bioclipse.chembl: Egon Willighagen master * rdc0aaeb / plugins/net.bioclipse.chembl/src/net/bioc​lipse/chembl/business/IChEMBLManager.java : Fixed params signature to match the match the actual method - http://bit.ly/cRdBlA
12:39 CIA-72 bioclipse.chembl: Egon Willighagen master * r3b70bcf / (2 files): Added method to get the properties of a target: organism, title, and type - http://bit.ly/bzavPQ
12:40 CIA-72 bioclipse.chembl: annzi master * rde3861e / (3 files in 2 dirs): Added convenient methods to the chembl plug-in - http://bit.ly/93HOrg
12:40 CIA-72 bioclipse.chembl: annzi master * rebc58ca / (2 files): Added a method that searches compound info with SMILES. And changed getForMaris to getPCM - http://bit.ly/bjgN1q
12:40 CIA-72 bioclipse.chembl: annzi master * rdb570c6 / (2 files): wizard for chembl and chembl moss, not complete - http://bit.ly/bVchDf
12:42 CIA-72 bioclipse.chembl: Egon Willighagen master * rcb031da / plugins/net.bioclipse.chembl/.set​tings/org.eclipse.jdt.core.prefs : Removed local files from repos: .settings folders - http://bit.ly/a7AP6j
12:50 annzi egonw: of course I managed to get one newer commit before another and since everything is possible in git it is solvable right :) ?
12:50 egonw yes
13:08 annzi egonw: been reading…do I type git reset and then keep on going?
13:09 egonw dunno, I do not know what state your branch is in
13:10 annzi well I want to remove the last commit so that I can add an other one before
13:10 egonw so, what exactly happened?
13:11 egonw did the patch apply?
13:11 egonw you skipped one? only one?
13:11 egonw what happens if you try to apply that missed one patch on top of the last you have now?
13:13 annzi I added onw of your commits before mine..and the funny thing the things you remomve from the .settings file are the things I add in my next commit but I can easily change the .settings file and remove the things you removd
13:13 annzi later
13:14 egonw ah, ic
13:14 egonw yeah, do that
13:15 egonw easier than fixing the history
13:15 annzi ok
13:42 egonw annzi: how is the patch applying going
13:42 annzi egonw: not so good
13:42 egonw I still see some 12-13 patches in the queu
13:42 annzi still trying to solve the problem
13:43 annzi can't keep on going since my next commit fail due to the error made
13:43 egonw ok, hang on
13:45 egonw ok, refresh the fork queue web page
13:45 egonw I have rebased here, and pushed new patches
13:46 annzi would you like to explain how you did it
13:46 annzi ?
13:46 egonw just rebase
13:46 annzi aha
13:47 egonw it will likely suffer from the .settings/ not going to get deleted
13:47 egonw but that's for later
13:47 annzi but that is fixable afterwards
13:48 annzi I printed the screen so I know what you did
13:54 annzi egonw: don't think it worked..
14:00 egonw ok, can you give me write access then?
14:01 egonw to you repos?
14:01 egonw youR
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14:05 annzi ok I added you
14:12 annzi egonw_: isn't reset --hard a solution?
14:16 egonw_ dunno
14:20 egonw my three ACS Boston talks are accepted :)
14:20 egonw now if I only got together the travel funding ... :(
14:27 annzi egonw: congrats :)
14:28 annzi i have to leave in a minute but will try to solve the problem later...
14:31 egonw annzi: ping
14:32 annzi egonw: yes
14:32 egonw annzi: I'm pushing the remaining commits to github
14:32 annzi ok all but the one that doesn't work that is?
14:33 egonw we'll see
14:33 egonw pushed
14:33 egonw tig
14:33 egonw oops. wrong windows
14:33 egonw there goes my email pwd
14:35 annzi ok great sorry for the mess..one small commit turns it up side down…grr on me
14:35 egonw annzi: only grrr when you do it another time
14:35 CIA-72 bioclipse.chembl: Egon Willighagen master * rb76e132 / plugins/net.bioclipse.chembl.ui/.s​ettings/org.eclipse.jdt.core.prefs : Removed local files from repos: .settings folders - http://bit.ly/9QPaD0
14:35 annzi have to leave now, will be late otherwise
14:35 egonw all's fine now
14:35 egonw ok, bye!
14:35 annzi wow you just pushed the other ones?
14:36 annzi interesting
14:36 egonw yeah
14:36 egonw git++
14:36 annzi ok yes
14:36 egonw git needs to learn to know you
14:36 annzi g++
14:36 annzi git ++
14:36 annzi indees
14:36 annzi d
14:36 egonw but ones he knows you, he's very kind
14:36 egonw once
14:36 annzi haha
14:37 * masak hugs git
14:37 annzi have a nice weekend will look into the changes  tomorrow
14:37 annzi bye bye
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