Camelia, the Perl 6 bug

IRC log for #bioclipse, 2010-06-08

| Channels | #bioclipse index | Today | | Search | Google Search | Plain-Text | summary

All times shown according to UTC.

Time Nick Message
04:04 sneumann joined #bioclipse
06:11 sneumann joined #bioclipse
06:19 annzi joined #bioclipse
06:45 Gpox joined #bioclipse
06:51 Gpox joined #bioclipse
07:27 splicer joined #bioclipse
07:40 s_wolf joined #bioclipse
08:02 sneumann_ joined #bioclipse
08:05 edrin joined #bioclipse
08:48 masak joined #bioclipse
09:20 jonalv joined #bioclipse
09:25 egonw joined #bioclipse
09:29 jonalv should we use org.openscience.cdk.inchi?
09:29 jonalv it has version 1.3.5.0bioclipse1
09:29 jonalv that sounds intresting...
09:30 jonalv egonw, Gpox?
09:31 egonw cdk.inchi.standard
09:31 egonw same version
09:31 egonw the new InChI stuff is actually not part of 1.3.5
09:31 jonalv what about net.sf.jniinchi?
09:32 jonalv structuredb depends on both those...
09:35 egonw please change that
09:35 egonw I'll remove the two old ones from the bioclipse branch
09:38 jonalv egonw: you mean net.sf.jniinchi.standard?
09:38 egonw yes
09:38 egonw think so
09:38 CIA-70 org.openscience.cdk: Egon Willighagen bioclipse2.4 * r331a177 / (14 files in 7 dirs): Removed two plugins that Bioclipse 2.4 does not use, solving some reasonable confusion on which JNI-InChI to use: 0.5 or 0.7 (which is the latter) - http://bit.ly/9SH5GH
09:43 CIA-70 bioclipse.core: jonalv 2.4.x * rc9a686d / (13 files in 5 dirs):
09:43 CIA-70 bioclipse.core: removed net.bioclipse.logger
09:43 CIA-70 bioclipse.core: Now that we are using logback the inclusion of this bundle tends to wreck havoc so best to get rid of it alltogether. - http://bit.ly/axSmMw
09:46 jonalv egonw: quick question, did you say that I should use org.opensicence.cdk.inchi.standard? If so, where do I find that one?
09:48 egonw in the org.openscience.cdk repos
09:49 egonw Gpox: quick question... can Buckminster already be used to set up a BC workspace in Eclipse?
09:49 jonalv egonw: it's not there
09:50 egonw yeah, correct
09:50 egonw cdk.sinchi
09:50 egonw sorry
09:50 Gpox egonw: no not yet
09:50 egonw Gpox: no worries... was just wondering
09:51 jonalv egonw: ah okey that one existed, let's see if it works
12:11 Gpox egonw: Bioclipse does't add the BasicSceneGenerator
12:11 egonw oh...
12:11 egonw ah...
12:11 egonw that would explain a lot
12:25 egonw Gpox: got a sec?
12:26 egonw oh, never mind
12:58 CIA-70 bioclipse.core: Arvid Berg 2.4.x * r90fced0 / plugins/net.bioclipse.jsexecution/src/net/biocl​ipse/jsexecution/execution/ScriptExecution.java :
12:58 CIA-70 bioclipse.core: If method in script is void return script result is set to "null"
12:58 CIA-70 bioclipse.core: Solves bug 1976 - http://bit.ly/9S5ToW
12:58 zarah bug #1976 | http://tinyurl.com/3ahep3s
13:01 jonalv egonw: 15>00 hours
13:01 egonw indeed
13:01 egonw as said, I think we have a go...
13:02 egonw Arvid and I can fix the remaining problems tomorrow, I think
13:02 egonw RC2 tomorrow should be feasible
13:04 jonalv hm so thursday then maybe
13:05 jonalv I am considering being at the hospital tomorrow
13:05 jonalv then there is one extra day for Bioclipse 2 stuff
13:06 egonw Gpox: this commit message for your commit OK?
13:06 egonw "Added setRenderingParameter convience method, using generics powers"
13:06 Gpox yes
14:17 samuell_ joined #bioclipse
14:31 jonalv egonw: quick question, do you know if therei s a testclass for net.bioclipse.business.BioclipsePlatformManager?
14:32 egonw does not seem so...
14:32 egonw use the SDK
14:32 egonw (for which I still need to apply that patch) :(
14:33 jonalv what patch?
14:33 jonalv (and how did I install that again :)
14:33 jonalv egonw: did we have an updaet site?
14:34 egonw yeah, think so...
14:34 egonw @google bioclipse sdk update site
14:34 zarah egonw: http://wiki.bioclipse.net/index.php%​3Ftitle%3DUser:Samuell/Plugin_develo​pment_for_Bioclipse_-_from_Scratch
14:34 jonalv cool
14:34 jonalv zarah++
14:34 jonalv egonw++
14:44 jonalv egonw: I can't get that wizard to work :(
14:52 mgerlich joined #bioclipse
14:57 * masak .oO( try getting the sorcerer's apprentice to work... )
14:57 CIA-70 bioclipse.core: jonalv 2.4.x * rc6fdcaa / (2 files):
14:57 CIA-70 bioclipse.core: added bioclipse.version() method
14:57 CIA-70 bioclipse.core: It gives the same string which is used in the splash screen also known as the eclipse.buildId property - http://bit.ly/bT7JYu
14:57 CIA-70 bioclipse.core: jonalv 2.4.x * r81d6606 / plugins/net.bioclipse.business/src/net/biocl​ipse/business/BioclipsePlatformManager.java : automagic whitespace cleanup - http://bit.ly/dxhhhv
17:34 jpansanel joined #bioclipse
17:57 sneumann_ joined #bioclipse
19:09 _ilbot2 joined #bioclipse
19:09 Topic for #bioclipseis now An open source workbench for chem- and bioinformatics - http://www.bioclipse.net/ | BioclipseWiki => http://wiki.bioclipse.net/ !! | logs => http://colabti.org/irclogge​r/irclogger_logs/bioclipse & http://moritz.faui2k3.org/irc​log/out.pl?channel=bioclipse || Bioclipse2 beta released! See http://bioclipse.blogspot.com/ || http://www.youtube.com/watch?v=ZUBQknWUEYU
20:20 egonw joined #bioclipse
23:19 jpansanel joined #bioclipse

| Channels | #bioclipse index | Today | | Search | Google Search | Plain-Text | summary