Camelia, the Perl 6 bug

IRC log for #bioclipse, 2010-06-11

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All times shown according to UTC.

Time Nick Message
05:05 egonw_ joined #bioclipse
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08:47 * sneumann is downloading RC2_1
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10:15 egonw_ @tell jonalv the 64 bit linux version boots on ubuntu
10:15 zarah Consider it noted.
10:22 sneumann confirmed ubuntu 10.04 64bit runs here
10:23 * egonw_ is testing installing from the update site
10:33 egonw Gpox: can you reset my pele password?
10:33 zarah egonw: You have new messages. Write '/msg zarah @messages' to read them.
10:33 egonw @msg
10:33 zarah egonw: 18 h 8 m 32 s ago, jonalv said okey feel free to try again now. I sure hope it works. I don't have a 64 bit linux machine myself so I can't test that build
10:33 Gpox egonw: sure
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11:47 samuell joined #bioclipse
11:47 samuell GPLv2 vs GPLv3 vs BSD vs LGPL?
11:48 samuell At SMW they don't care too much as long as it is a compatible license, so just thought if there are some general hints
11:49 egonw what's the sitation?
11:49 samuell ... for the Semantic MediaWiki RDF Connector extension.
11:49 egonw what the semmediawiki license?
11:49 egonw what is the semmediawiki license?
11:49 samuell GPLv2
11:49 egonw and the ARC lib?
11:49 * samuell checks
11:49 samuell W3C
11:49 samuell license
11:49 samuell also under GPLv2 and 3
11:50 samuell Hmm ... well, guess that restricts me to GPLv2 / 3
11:51 samuell Or not ... there is a "semantic bundle" ... including smw + other extensions, with the bundle under the BSD license
11:53 samuell Well, guess it will not affect connection with Bioclipse much anyway ...
11:54 samuell since connection would happen (optimally) via REST/SPARQL ... or REST at least
11:54 egonw no, that means GPLv2 for your work
11:54 egonw GPL v2 and v3 are *not* compatible
11:55 samuell Right ...
11:55 samuell Ok, thanks!
12:00 edrin joined #bioclipse
12:00 edrin hi
12:00 zarah ni hao edrin
13:16 jonalv joined #bioclipse
13:43 * jonalv shakes his head and is beginning to wish we hadn't gone with egonw's new CDK version after all
13:43 jonalv I am finding bug after bug in the new release candidate
13:43 egonw such as?
13:43 jonalv and inchi is not even working after all
13:44 jonalv multiple stuff with the sdf editor
13:44 jonalv now latest something about jchempaint
13:44 egonw such as?
13:44 jonalv http://pele.farmbio.uu.se/cgi-bin/bugzilla/bugl​ist.cgi?query_format=advanced&short_desc_ty​pe=allwordssubstr&short_desc=&version=2​.4.0.RC2&long_desc_type=substring&long_​desc=&bug_file_loc_type=allwordssubstr&​bug_file_loc=&deadlinefrom=&deadlineto=​&bug_status=NEW&bug_status=ASSIGNED&amp​;bug_status=REOPENED&emailassigned_to1=1&am​p;emailtype1=substring&email1=&emailass​igned_to2=1&emailreporter2=1&emailcc2=1​&emailtype2=substring&email2=&bugid​type=include&bug_id=&votes=&
13:44 zarah jonalv's link is also http://tinyurl.com/2vswxqd
13:45 jonalv zarah++
13:46 egonw jonalv: what's makes you sure these are caused by the new CDK?
13:46 egonw have you verified them in RC1?
13:47 jonalv egonw: probably not all of them
13:47 egonw but some?
13:47 jonalv yea probably
13:47 egonw but do add such information to the bug report... it's important
13:47 jonalv hang on the is one missing
13:49 jonalv try now
13:49 jonalv @pz 1992
13:49 zarah http://pele.farmbio.uu.se/cgi-bi​n/bugzilla/show_bug.cgi?id=1992
13:50 jonalv at least that one must be because of version changes, or am I wrong?
13:51 egonw yes
13:51 egonw no, you are not wrong
13:51 egonw yes, this is a true regression
13:51 egonw the scale is not set propely
13:52 egonw but I am not sure about those mol table things...
13:52 egonw nothing has really changed in SD file saving
13:52 jonalv k
13:52 egonw bug 1987 is a true regression too...
13:59 egonw another regression (I think) is that the atom labels are nicely transparent now...
13:59 egonw but the bonds not clipped yet
14:21 CIA-71 bioclipse.core: Arvid Berg 2.4.x * ra3a3d37 / plugins/net.bioclipse.logback/src/logback.xml : Changed loglevel to INFO - http://bit.ly/9bt8p5
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