Camelia, the Perl 6 bug

IRC log for #bioclipse, 2010-06-24

| Channels | #bioclipse index | Today | | Search | Google Search | Plain-Text | summary

All times shown according to UTC.

Time Nick Message
02:04 samuell joined #bioclipse
02:10 zarah joined #bioclipse
02:10 miguelrojasch joined #bioclipse
04:04 egonw_ joined #bioclipse
05:01 sneumann_ joined #bioclipse
05:50 annzi joined #bioclipse
06:46 sneumann_ joined #bioclipse
07:05 egonw_ joined #bioclipse
07:05 egonw_ moin
07:05 zarah oh hai egonw_
07:19 sneumann_ joined #bioclipse
07:19 egonw_ virtual Eclipse Helios conference -> http://www.eclipse.org/helios/heliosinaction.php
07:19 zarah egonw_'s link is also http://tinyurl.com/34lo2ff
07:47 Gpox joined #bioclipse
07:53 CIA-71 bioclipse.core: Egon Willighagen 2.4.x * r91a6a27 / plugins/net.bioclipse.ioformats/plugin.xml : Use the new, not deprecated, extension point for content types - http://bit.ly/d6Mwnd
07:54 CIA-71 bioclipse.cheminformatics: Egon Willighagen 2.4.x * r768da7b / (3 files in 3 dirs): Use the new, not deprecated, extension point for content types (fixes #1999) - http://bit.ly/d0FeeJ
07:54 zarah bug #1999 | http://tinyurl.com/32nrnt9
07:54 egonw_ bbl
08:51 egonw_ joined #bioclipse
08:54 egonw_ Gpox: can you have a look at 1984
08:54 egonw_ I think it can be closed
08:57 Gpox yes it can
09:00 egonw_ Gpox: you can better reassign a bug to the repos owner for him to close...
09:00 egonw_ now the bug is closed, but the patch not yet applied...
09:00 egonw_ (yes, yes, working on it... :)
09:06 egonw_ patch function confirmed
09:06 egonw_ pushing now
09:06 CIA-71 bioclipse.cheminformatics: Arvid Berg 2.4.x * rd7bc081 / plugins/net.bioclipse.cdk.jchempaint/src/net/bioc​lipse/cdk/jchempaint/editor/JChemPaintEditor.java :
09:06 CIA-71 bioclipse.cheminformatics: Added dummy selection event and change property constants to match with property source.
09:06 CIA-71 bioclipse.cheminformatics: Also removed out commented code relating to recalculation of SMILES and InChI properties.
09:06 CIA-71 bioclipse.cheminformatics: Solves bug 2016 - http://bit.ly/b7Ndr2
09:06 CIA-71 bioclipse.cheminformatics: Arvid Berg 2.4.x * r4aaf90b / plugins/net.bioclipse.cdk.jchempain​t/src/net/bioclipse/cdk/jchempaint/​widgets/JChemPaintEditorWidget.java :
09:06 CIA-71 bioclipse.cheminformatics: Cleaned up code related to selections and structure changed events.
09:06 CIA-71 bioclipse.cheminformatics: This was done while researching bug 2016 - http://bit.ly/dCPxM3
09:06 zarah bug #2016 | http://tinyurl.com/29bqhns
09:06 zarah bug #2016 | http://tinyurl.com/29bqhns
09:06 egonw_ bug #2016 | http://tinyurl.com/29bqhns
09:06 egonw_ oh, no, now I am confusing zarah
09:35 CIA-71 org.openscience.cdk: Arvid Berg bioclipse2.4 * r1b57bb0 / plugins/org.openscience.cdk.controlbasic/src/org/​openscience/cdk/controller/AddBondDragModule.java :
09:35 CIA-71 org.openscience.cdk: Fixes NPE when source is null.
09:35 CIA-71 org.openscience.cdk: It should not set start point if the bond order are cycled - http://bit.ly/a1ivfs
09:36 egonw_ Gpox: it compiles, but not sure how to get it to compile stuff for OS/X
09:37 olass joined #bioclipse
09:38 olass moin
09:38 zarah hello olass, you fantastic person you
09:38 * olass blushes
09:38 egonw_ Gpox: I indeed actually did apply something for the NPE problem in AddBondDragModule...
09:44 egonw_ annzi, Gpox: http://masterorganicchemistry.word​press.com/2010/06/23/exam-tip-dont​-just-bring-your-model-kit-use-it/
09:44 zarah egonw_'s link is also http://tinyurl.com/37uxban
09:44 egonw_ ummm
09:44 egonw_ annzi, masak: http://masterorganicchemistry.word​press.com/2010/06/23/exam-tip-dont​-just-bring-your-model-kit-use-it/
09:44 zarah egonw_'s link is also http://tinyurl.com/37uxban
09:44 egonw_ Gpox: sorry, wrong nick
09:45 masak joined #bioclipse
09:46 CIA-71 bioclipse.cheminformatics: Arvid Berg 2.4.x * r2218191 / plugins/net.bioclipse.cdk.jchempaint.view/src/net/​bioclipse/cdk/jchempaint/view/ChoiceGenerator.java :
09:46 CIA-71 bioclipse.cheminformatics: Added missing generic specification for IGenerator
09:46 CIA-71 bioclipse.cheminformatics: This was caused buy changes upstream.
09:46 CIA-71 bioclipse.cheminformatics: Might solve bug 1995 - http://bit.ly/bAA3wd
09:47 zarah bug #1995 | http://tinyurl.com/3y6g72h
09:52 egonw_ Gpox: all IGenerator<> are now typed
09:53 egonw_ ChoiceGenerator seems to have been the last one
10:14 CIA-71 bioclipse.cheminformatics: Egon Willighagen 2.4.x * r6676c50 / plugins/net.bioclipse.cdk.business/src/n​et/bioclipse/cdk/domain/CDKMolecule.java : Also fail when the atom type is X (for unknown) - http://bit.ly/bcOmEe
10:14 CIA-71 bioclipse.cheminformatics: Egon Willighagen 2.4.x * r028fc8d / plugins/net.bioclipse.cdk.business/src/net/bioc​lipse/cdk/domain/CDKMoleculePropertySource.java : Do not create SMILES or InChI when not all atom types are well defined (fixes #2015) - http://bit.ly/9e0Cj5
10:14 zarah bug #2015 | http://tinyurl.com/37mb522
10:55 samuell joined #bioclipse
10:56 annzi joined #bioclipse
10:56 egonw_ annzi, samuell: http://www.slideshare.net/micheldumontier/​were-all-smiles-building-chemical-semantic​-web-services-with-sadi-chebi-and-cheminf
10:57 zarah egonw_'s link is also http://tinyurl.com/33s67s9
11:16 egonw_ construct { ?activity ?p ?o } where {?activity a <http://rdf.farmbio.uu.se/chembl/onto/#Activity>; ?p ?o .} LIMIT 50
11:16 zarah egonw_'s link is also http://tinyurl.com/yggj5aw
11:28 olass joined #bioclipse
11:29 olass @ping
11:29 zarah olass: pong
11:32 egonw_ olass: pong
12:12 annzi samuell: http://rdf.farmbio.uu.se/chembl/snorql/
12:12 zarah annzi's link is also http://tinyurl.com/33uc56p
12:33 egonw_ NewSdfWizard
13:07 egonw_ annzi, samuell: more reading stuff: http://www.slideshare.net/neilswainston/cheb​i-and-genome-scale-metabolic-reconstructions
13:07 zarah egonw_'s link is also http://tinyurl.com/35d8fog
13:21 samuell egonw_: Thx
13:53 jonalv joined #bioclipse
14:04 egonw_ hi jonalv!
14:04 jonalv hi egonw_
14:18 egonw jonalv: please ack on @pz 2019
14:19 jonalv @2019
14:20 jonalv @p` 2019
14:20 jonalv @pz 2019
14:20 zarah http://pele.farmbio.uu.se/cgi-bi​n/bugzilla/show_bug.cgi?id=2019
14:20 * jonalv is having one of those days
14:21 jonalv egonw: but yea I ahve seen the bug now
14:22 egonw ok, excellent, thanx
15:45 samuell joined #bioclipse
18:01 egonw joined #bioclipse
18:29 lear joined #bioclipse
18:35 sneumann_ joined #bioclipse

| Channels | #bioclipse index | Today | | Search | Google Search | Plain-Text | summary