Camelia, the Perl 6 bug

IRC log for #bioclipse, 2010-07-08

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All times shown according to UTC.

Time Nick Message
05:04 slyrus_ joined #bioclipse
06:01 annzi joined #bioclipse
06:48 olass joined #bioclipse
06:48 olass moin
06:48 zarah saluton olass
07:03 CIA-71 bioclipse.ds: Ola Spjuth 2.4.x * r9a5763a / (5 files in 4 dirs):
07:03 CIA-71 bioclipse.ds: Updated to provide aromatic Signatures.
07:03 CIA-71 bioclipse.ds: * Updated to Signatures 20100707
07:03 CIA-71 bioclipse.ds: * Added adaptor between CDK and Signatures (maclean++)
07:03 CIA-71 bioclipse.ds: * Rewrote manager to use new adapter and removed all serialization to SDF - http://bit.ly/aLb4Yf
07:03 CIA-71 bioclipse.ds: Ola Spjuth 2.4.x * re7cd23a / (2 files in 2 dirs): Started working on Signatures tests. - http://bit.ly/bqyBzL
07:04 Gpox joined #bioclipse
07:38 olass anyone who has suggestions for a good IRC client in Windows?
07:48 abereles joined #bioclipse
07:48 abereles oh, it worked
07:49 abereles olass: ping
07:49 olass abereles: pong
07:49 olass welcome
07:51 abereles so i am not sure what remains to be done -- build issues while not completely resolved seem to be fixable
07:52 olass yes, strange
07:52 olass I'd love to see someone else on windows follow your approach with egit
07:53 olass but glad it works now at least
07:53 abereles well, i am not sure why what I did originally did not quite work
07:53 abereles it kind of worked
07:53 olass Bockminster will anyway make the procedure unnecesary
07:53 olass Buckminster
07:55 abereles yeah, so i want to work now on making some enhancements
08:02 olass abereles: great
08:03 olass do you have a plan?
08:03 olass add code to a plugin or create a new plugin?
08:04 edrin joined #bioclipse
08:05 olass abereles: I suggest to cluster molecules
08:05 olass let me look up some links
08:09 olass abereles: here is a question asked
08:09 olass http://blueobelisk.shapado.com/questions/what-to​ols-are-available-for-clustering-small-molecules
08:09 zarah olass's link is also http://tinyurl.com/3ynv4r3
08:09 olass Bioclipse would be ideal for this
08:10 olass in principle:
08:10 olass You can generate fingerprtints for molecule with CDK
08:11 olass which is just a long bitstring, where each bit says if a certain predefined chemistry-fragment exixts
08:11 olass so 00010000010000 might mean you have a "-COH" and a "-NH2" group, but not some other chemistry fragments
08:12 olass this means, the more ones that two molecules have in common, the more similar they are
08:12 olass hence it is possible to cluster based on fingerprints (or simply FP)
08:12 olass abereles: are you with me?
08:13 olass I guess a good manager method in the CDKManager would be something like:
08:14 olass public List<List<ICDKMolecule>> clusterMolecules(List<? extends IMolecule> mols, int numberOfClusters)
08:15 olass which would take a list of molecules as input, and deliver N lists of molecules
08:15 olass according to a clustering algorithm
08:15 olass abereles: are you seeing this?
08:16 olass next step, it would be nice to be able to visualize the clustering in a graph
08:17 olass but I think the above is a nice start
08:17 olass if you like, you can do your own plugin, with your own manager
08:17 olass that would probably be a useful excercise
08:18 olass this link gives an introduction: http://wiki.bioclipse.net/index.p​hp?title=How_to_make_a_manager_2
08:18 zarah olass's link is also http://tinyurl.com/ouun2r
08:18 olass and see also the existing managers in Bioclipse for hints
08:18 abereles okay, i will have some questions probably after i look
08:18 olass sure thing
08:18 olass I'll be around
08:22 CIA-71 bioclipse.ds: Ola Spjuth 2.4.x * rde12ff0 / (4 files in 4 dirs):
08:22 CIA-71 bioclipse.ds: Wrote tests for AtomSignatures and MolecularSignature.
08:22 CIA-71 bioclipse.ds: * Use an SDF with precomputed Signatures as expected values - http://bit.ly/dcjo5V
08:23 * olass goes back to testing Bioclispe RC3
08:31 abereles is there usually/always a manager associated with a plugin?
08:36 olass not really
08:36 olass it is just if the plugin contributes functionality that should be available from scripting
08:37 olass but since we want all functionality to be scriptable, this is the preferred way
08:37 olass but e.g. the chart plugin just adds UI components (a Chart view)
08:41 olass abereles: Bioclispe SDK for creating managers: http://wiki.bioclipse.net/in​dex.php?title=Bioclipse_SDK
08:41 zarah olass's link is also http://tinyurl.com/34mg6pg
08:42 olass it integrates with Eclipse and gives you new options for creating Bioclipse plugins in Eclipse, autogenerating a lot of manager boilerplate code
08:42 olass give it a try!
08:43 abereles i will
08:45 abereles left #bioclipse
08:48 jonalv joined #bioclipse
08:48 olass jonalv: o/
08:48 jonalv olass: hi
08:48 olass jonalv: see bug 2055
08:48 olass an export problem
08:49 olass works when run from within Eclipse
08:49 jonalv olass: nope the export has worked fine for me so far
08:49 olass ?
08:49 jonalv has something changed since last time I exported?
08:49 olass does joelib descriptors work for you then?
08:49 jonalv olass: I don't even know how to test that
08:49 olass you see
08:50 olass how can you then say export worked fine?
08:50 jonalv olass: you asked me whether I had errors during export
08:50 jonalv olass: I had not
08:50 olass no, when building the update site I asked
08:50 olass joelib is not in the export
08:50 jonalv olass: the update site I mean
08:50 olass hmm..
08:51 * jonalv realisd that he should test a bit on Ubuntu so he is running that now
08:51 * olass is testing QSAR quite extensively...
08:51 jonalv olass: but what maeks you thikn it should be a åproblem that occurs during building?
08:52 olass Gpox: how do I see the log file from Eclipse now?
08:52 olass ah, Bioclipse
08:52 olass after we switched to logback?
08:53 olass Gpox: would be nice to have a button "see log file" in the about dialog...
08:55 olass jonalv: can we skype?
08:55 olass jonalv: I'l lcall you in 3 mins
08:55 * olass MUST have coffee when skype:ing
08:56 jonalv olass: okej I will restart to Windows then...
08:56 jonalv brb
08:59 * olass is loaded with coffee
09:18 jonalv joined #bioclipse
09:26 jonalv bioclipse.2.4.0.updateMain
09:36 jonalv joined #bioclipse
09:42 jonalv hm I can't run 2.4.0.RC3 on my Ubuntu machine
09:43 jonalv Gpox: busy?
09:43 Gpox no
09:44 jonalv Gpox: you have linux right? Can you test the 2.4.0.RC3 release on linux?
09:44 jonalv Gpox: just see that it starts
09:44 jonalv or if it starts rather
09:45 olass jonalv: ping
09:45 jonalv olass: pong
09:45 olass jonalv: did you rerun the Scripting Language Docu generation?
09:45 olass perl scripts
09:45 jonalv olass: say what?
09:45 olass masak + egonw wrote them
09:45 jonalv olass: no one has given many any instructions for that so no
09:46 olass jonalv: we have discussed this 100 times on IRC
09:46 olass you just forgot
09:46 jonalv I didn't even know they had to be rerun
09:46 olass but it's ok
09:46 olass maybe they don't for you
09:46 olass open Help system
09:46 olass under bioclipse Scripting, see Scripting Language Documentation
09:46 olass that page is generated
09:47 jonalv I don't know, all I know regarding perl is that I ahve some evil Perl exceptions in regard to builds
09:47 jonalv olass: is that in Bioclipse?
09:47 olass using a perl script in net.bioclipse.doc
09:47 jonalv olass: that is broken
09:47 jonalv I know that it doesn't run on my computer
09:47 olass please ask masak to either fix it or rerun it and send a patch
09:48 jonalv where is masak?
09:48 olass you tell me
09:48 jonalv ah never mind I am guessign he is sleeping
09:48 olass sleeping?
09:48 * jonalv adds that to his list of things to do
09:48 olass right..
09:48 * olass continues testing
09:53 Gpox jonalv: It starts but missing cdk stuff
09:54 olass not good
09:54 olass linux is important
09:54 olass jonalv: if I need to provide patches for cheminformatics repo, whould I checkout 2.4.0 tag from you first?
09:55 olass damn. missed him
09:55 olass hmm, alreade there :)
09:58 * olass needs food
10:32 * olass is back with a full stomach
10:59 olass Gpox: ping
10:59 Gpox olass: pong
11:00 olass in net.bioclipse.cdk.ui.sdfeditor, in build tab of manifest
11:00 olass schema is not checked
11:00 olass but propertycalculation still works for inchi, number of atoms
11:00 olass how come?
11:01 Gpox I don't know
11:01 olass should it not be cjecked?
11:01 olass just wanted to see if this was a deprecated EP
11:01 * olass will provide a patch to jonalv
11:04 olass Gpox: what is the EP used for?
11:04 olass well, it works...
11:04 olass why care now :)
11:12 olass Gpox: can you look at 2056 when you have a minute over?
11:13 olass maybe you can tell something from the stacktrace?
11:19 Gpox no, no idea what is going on
11:19 olass ok
11:19 olass let's leave it then..
11:19 olass until we can reproduce..
11:19 olass I guess you could not reproduce?
11:21 Gpox no
11:30 olass Gpox: filed critical bug 2057
11:30 olass please have a look
11:37 olass Gpox: can you reproduce?
11:37 Gpox yes
11:37 olass good
11:43 jonalv joined #bioclipse
11:43 * jonalv is back
11:44 olass @pz target:2.4.0
11:45 zarah [2056] MolTable throws NPE after calc... http://tinyurl.com/24dpmvr
11:45 zarah [2057] MolTable fails writing file wh... http://tinyurl.com/2arwf33
11:45 zarah [2051] Switching window activates hid... http://tinyurl.com/3afuqog
11:45 zarah Entire list at http://tinyurl.com/353glxs
11:45 olass Gpox: can we move 2051 to 2.4.x?
11:45 olass and maybe 2056 too (sinc eyou could not reproduce)?
11:45 olass I get that NPE from time to time however...
11:45 olass but no logic in it
11:46 olass jonalv: but 2057 we must fix
11:46 Gpox sure
11:46 jonalv olass: yea that sounds quite bad actually
11:46 edrin joined #bioclipse
11:49 Gpox jonalv: sent a pull request
11:50 jonalv Gpox: ah najs
11:50 Gpox olass: check 2057
11:51 olass ok
11:52 olass Gpox: I can, can you please explain why this is tha case?
11:52 masak joined #bioclipse
11:52 olass (regarding your bug comment)
11:52 Gpox The property framework needs a rewrite
11:52 olass :)
11:52 * olass is OK with that explanation
11:53 Gpox In the case of NumberOfAtoms property, it is not converted to an int when read and thus can't be converted back to String when it is writen
11:54 jonalv Gpox: pulled, thx
11:56 CIA-71 bioclipse.ds: Ola Spjuth 2.4.x * r3084ab1 / (2 files): Check for String, addressing comments in bug 2057. - http://bit.ly/9nvvD3
11:56 zarah bug #2057 | http://tinyurl.com/2arwf33
11:56 Gpox The calculated properties are handlet diffrently than others, which becomes unmanageable when it is not done every where
11:57 jonalv olass: can you send me pull requests for all repos that you make changes in just like Gpox++ does?
11:57 olass jonalv: I guess..
11:57 jonalv yey \o/
11:58 olass but will do that in a chunk
11:58 jonalv yea
11:58 olass jonalv: have you applied all Gpox reqs?
11:58 olass including for bug 2057?
11:58 jonalv olass: I only know of that one
11:58 olass ok
11:58 jonalv olass: and yes I ahve applied it
11:59 olass ack
12:05 jonalv Gpox: did you get Bioclispe to run on linux?
12:06 Gpox it starts but I am missing the cdk manager
12:06 CIA-71 bioclipse.core: Carl Masak 2.4.x * rae4846a / plugins/net.bioclipse.doc/run-the-whole-thing :
12:06 CIA-71 bioclipse.core: [n.b.doc] run-the-whole-thing writes to file
12:06 CIA-71 bioclipse.core: Instead of writing to STDOUT as it used to. Both egonw and jonalv wanted it
12:06 CIA-71 bioclipse.core: this way; I comply. - http://bit.ly/cvKact
12:08 jonalv (gah)
12:08 jonalv what works around here?
12:12 jonalv so current status of things, Bioclispe 2.4.x does not run on linux, the help generation script does not run.
12:12 jonalv olass: do you ahve more?
12:13 olass no
12:13 Gpox I will go afk for about two hours
12:13 olass buit the linux running sounds serious
12:13 olass Gpox: ok
12:13 olass jonalv: when did it run last time?
12:13 olass did RC3 run?
12:13 olass RC2?
12:13 olass RC1?
12:14 jonalv olass: the pel script?
12:14 olass linux running
12:14 jonalv olass: or the linux export?
12:14 olass that is a blocker
12:14 jonalv ah
12:14 jonalv no shit
12:14 olass the script is just a nuicance
12:14 jonalv I am going to explore that
12:14 jonalv first I am going to test my latest 2.4.0 build though
12:15 edrin egon's still on holidays?
12:16 olass yes
12:16 olass jonalv: please apply my pull request too
12:17 olass jonalv: have you branched 2.4.0 in core repo?
12:17 jonalv olass: yes
12:17 olass in your clone?
12:17 olass or in mine?
12:18 olass you have write access...
12:18 jonalv olass: what does it look like?
12:18 olass I see no brnch 2.4.0 in my origin..
12:18 jonalv you don't?
12:18 * jonalv dropes everything he is doing and helps olass
12:18 olass hmm, do I need to fetch them in some way?
12:19 * olass lokks in github too
12:19 olass no, I see no 2.4.0 in core on github either
12:19 olass have you pushed the branch to github?
12:19 olass bioclipse.core?
12:19 jonalv olass: I don't think so no
12:20 olass :)
12:20 olass will you do this or should I continue comitting to 2.4.x?
12:20 jonalv too many repos with different policies
12:20 jonalv olass: you may commit to 2.4.x, that should work fine
12:20 olass ok
12:21 * olass does that
12:22 CIA-71 bioclipse.core: Ola Spjuth 2.4.x * rf21ada6 / (6 files in 3 dirs):
12:22 CIA-71 bioclipse.core: Added external libraries anchor point in help system.
12:22 CIA-71 bioclipse.core: * Moved jing there.
12:22 CIA-71 bioclipse.core: * Cleaned up some help on the way - http://bit.ly/bOyN4P
12:23 olass jonalv: have you applied my pul lrequest in cheminformatics?
12:23 olass if not, let me know when you have
12:24 jonalv olass: what\s the rush?
12:24 olass just asking..
12:24 * olass hopes it applies
12:24 jonalv olass: okey I am on that now
12:26 jonalv olass: how many coimmits was it?
12:26 olass a few
12:26 * jonalv seees a whole bunch
12:26 olass 4-5?
12:26 olass 6?
12:26 * jonalv grumbles oemthing about multiple cherry picks...
12:26 olass hehe
12:27 * olass continues testing
12:29 jonalv olass: okey done
12:31 jonalv olass: rc2 worked on linux
12:31 olass try exporting again
12:32 olass I have seen it fail before
12:32 jonalv olass: okey, I am trying a late export now
12:32 olass please do
12:32 jonalv olass:  it worked
12:33 jonalv this was 32 bit version though
12:33 olass *puh*
12:33 jonalv I have not managed to test 64
12:33 olass right
12:33 olass it _should_work I guess
12:33 jonalv Who can test 64 for linux and windows?
12:33 jonalv or do we just hope it works since all other platforms work?
12:35 olass yes, we do
12:35 olass community will test
12:35 olass we do what we can
12:35 * olass is rewriting the QSAR cheatsheet
12:35 jonalv olass: I can't seem to get the new molcuel on the context menu in the Bioclispe Navigator
12:35 jonalv olass: is there some secret trck I am not familiar with?
12:35 olass what perspective are you in?
12:35 * jonalv has tested all
12:35 olass that is perspective-specific...
12:35 jonalv but cheminformatics and default
12:36 olass are you right-clicking on a project?
12:36 jonalv olass: yea
12:36 olass I get it here..
12:36 jonalv this is linux
12:36 olass file a bug for 2.4.x
12:36 jonalv seems generally borken
12:36 olass the whole linux distro?
12:36 olass does JCP and moltable work?
12:37 jonalv olass: no
12:39 jonalv no cdk manager in javascript
12:41 olass damn
12:41 olass stacktrace?
12:42 olass check that all features are available in the unzipped folder...
12:47 jonalv olass, Gpox: @bug 2059
12:47 jonalv @pz 2059
12:47 zarah http://pele.farmbio.uu.se/cgi-bi​n/bugzilla/show_bug.cgi?id=2059
12:48 jonalv olass, Gpox: Do you understand anything?
12:48 olass Gpox is away for another hour
12:48 olass to me it looks normal
12:48 olass just that cdk is not added
12:49 olass probably some missing dependency?
12:49 olass are all features available in the unzipped folder?
12:49 jonalv olass: I think so
12:50 * jonalv isn't really certain about how he can be sure
12:52 jonalv is this normal:
12:52 jonalv 14:41:23,867 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could
12:52 jonalv NOT find resource [logback-test.xml]
12:52 jonalv
12:52 olass jonalv: can you build a linux version from an Eclipse in Linux?
12:52 olass jonalv: that is normal
12:52 jonalv olass: not within reasonable timeframe no
12:52 olass ok
12:52 jonalv olass: I would have to start from scratch with everything
12:53 jonalv including downloading Eclipse
12:53 olass just 5 repos
12:53 olass but ok
12:53 jonalv + I would want a better Ubuntu config I where to actually work on it...
12:54 olass maybe Gpox can help, I don't have linux
13:15 CIA-71 bioclipse.qsar: Ola Spjuth 2.4.x * r8b9be2a / (5 files in 2 dirs): Updated cheatsheets in QSAR. - http://bit.ly/8ZtMDN
13:17 CIA-71 bioclipse.balloon: jonalv 2.4.x * rde59b23 / (7 files in 7 dirs): set version 2.4.0.20100709 - http://bit.ly/cGsazG
13:38 CIA-71 bioclipse.ds: Ola Spjuth 2.4.x * rfc0e461 / plugins/net.bioclipse.ds/src/net​/bioclipse/ds/model/TestRun.java : Removed test name from toString since this made serialization in moltable ugly. - http://bit.ly/9ub9n2
13:48 CIA-71 bioclipse.core: Carl Masak 2.4.0 * r9fa07b6 / plugins/net.bioclipse.doc/run-the-whole-thing :
13:48 CIA-71 bioclipse.core: [n.b.doc] run-the-whole-thing writes to file
13:48 CIA-71 bioclipse.core: Instead of writing to STDOUT as it used to. Both egonw and jonalv wanted it
13:48 CIA-71 bioclipse.core: this way; I comply. - http://bit.ly/deP1Qc
14:17 CIA-71 bioclipse.core: Carl Masak 2.4.x * r07fa7bf / (5 files in 2 dirs):
14:17 CIA-71 bioclipse.core: Revert "Fixes generation of manager documentation: only list docs for released managers in the platform_feature."
14:17 CIA-71 bioclipse.core: This reverts commit d593c94b35d48fdbb08ef3ccfe8ce801eb5e8403. - http://bit.ly/cZyygH
14:17 CIA-71 bioclipse.core: Carl Masak 2.4.x * rc3c894e / plugins/net.bioclipse.doc/run-the-whole-thing :
14:17 CIA-71 bioclipse.core: [n.b.doc] remove temp files from docgen script on error
14:17 CIA-71 bioclipse.core: No need to make them clutter up the directory if an error occurs. They are
14:17 CIA-71 bioclipse.core: output to STDOUT anyway. - http://bit.ly/9BEJn4
14:17 CIA-71 bioclipse.core: Carl Masak 2.4.x * r5f01617 / plugins/net.bioclipse.doc/​parse-file-for-annotations :
14:17 CIA-71 bioclipse.core: [n.b.doc] use YAML to generate stage1 info
14:17 CIA-71 bioclipse.core: Previously, the YAML was handcrafted. This method bitrotted quickly, and
14:17 CIA-71 bioclipse.core: nothing worked anymore. Giving the task to YAML simplifies the code and
14:17 CIA-71 bioclipse.core: makes the problem go away. - http://bit.ly/bOXMHo
14:17 CIA-71 bioclipse.core: Carl Masak 2.4.x * r8c1b1cd / plugins/net.bioclipse.doc/render-as-html :
14:17 CIA-71 bioclipse.core: [n.b.doc] renderer updated for new YAML output
14:17 CIA-71 bioclipse.core: Also found a case of insufficient HTML escaping; took the opportunity to
14:17 CIA-71 bioclipse.core: factor out home-brewed HTML sanitizer code into a sub. - http://bit.ly/dgyknt
14:17 CIA-71 bioclipse.core: Carl Masak 2.4.x * r0a18faa / plugins/net.bioclipse.doc/html/index.html :
14:17 CIA-71 bioclipse.core: [n.b.doc] re-generated html/index.html
14:17 CIA-71 bioclipse.core: Enjoy! Now with much fewer manager methods. :) - http://bit.ly/bDIpZG
14:25 CIA-71 bioclipse.core: Carl Masak 2.4.0 * re4221cd / plugins/net.bioclipse.doc/run-the-whole-thing :
14:25 CIA-71 bioclipse.core: [n.b.doc] remove temp files from docgen script on error
14:25 CIA-71 bioclipse.core: No need to make them clutter up the directory if an error occurs. They are
14:25 CIA-71 bioclipse.core: output to STDOUT anyway. - http://bit.ly/aqdpoO
14:25 CIA-71 bioclipse.core: Carl Masak 2.4.0 * r1397ade / plugins/net.bioclipse.doc/​parse-file-for-annotations :
14:25 CIA-71 bioclipse.core: [n.b.doc] use YAML to generate stage1 info
14:25 CIA-71 bioclipse.core: Previously, the YAML was handcrafted. This method bitrotted quickly, and
14:25 CIA-71 bioclipse.core: nothing worked anymore. Giving the task to YAML simplifies the code and
14:25 CIA-71 bioclipse.core: makes the problem go away. - http://bit.ly/cC8pZQ
14:25 CIA-71 bioclipse.core: Carl Masak 2.4.0 * r16f3dbb / plugins/net.bioclipse.doc/render-as-html :
14:25 CIA-71 bioclipse.core: [n.b.doc] renderer updated for new YAML output
14:25 CIA-71 bioclipse.core: Also found a case of insufficient HTML escaping; took the opportunity to
14:25 CIA-71 bioclipse.core: factor out home-brewed HTML sanitizer code into a sub. - http://bit.ly/c53Pgu
14:25 CIA-71 bioclipse.core: Carl Masak 2.4.0 * r6ddb5f2 / plugins/net.bioclipse.doc/html/index.html :
14:25 CIA-71 bioclipse.core: [n.b.doc] re-generated html/index.html
14:25 CIA-71 bioclipse.core: Enjoy! Now with much fewer manager methods. :) - http://bit.ly/c0BBWm
14:30 abereles joined #bioclipse
14:31 abereles how is bioclipse sdk accessed from eclipse?
14:39 jonalv hm there is an update site
14:40 jonalv there should be a wiki page or a blog post by egonw explaining this
14:40 * jonalv does not quite have the time to find it right now
14:40 jonalv trying to build 2.4.0 on ubuntu in virtual box
14:42 masak http://wiki.bioclipse.net/in​dex.php?title=Bioclipse_SDK
14:42 zarah masak's link is also http://tinyurl.com/34mg6pg
14:42 masak http://chemicalrcp.blogspot.com/2009/08/ma​king-bioclipse-development-easier-new.html
14:42 zarah masak's link is also http://tinyurl.com/nx57db
14:42 abereles yeah, i updated successfully and have looked at the wikipage
14:44 abereles was thinking it might come up when i was trying to build a new plugin
14:46 jonalv hm I think Gpox did some changes on that, I wonder if he is back yet
14:49 * jonalv stares at Resolving Rarget Platform (94%)
14:50 jonalv :)
14:51 abereles yeah, 94%
14:51 abereles shd be in wikipage
14:51 abereles tried help search on bioclipse no mention of sdk
14:53 abereles oh wait, masak's link looks promising
14:54 jonalv abereles: I think it added itself as an example in the new plugin project dialog. There are a coupld of starts or example there and I think the Bioclispe manager plugin should be added there
14:54 jonalv but I can't quite remember
14:54 jonalv egon who is on vacation did it
14:55 abereles yes, it does show up but does not make itself obstrusive :)
14:56 jonalv abereles: how do you mean?
14:56 abereles it is possible maybe to miss it entirely
14:56 jonalv ah, yea I thought there weere instructions somewehre
14:56 jonalv abereles: but you got it working now?
14:57 abereles let me at least enhance the wiki page now
14:57 jonalv sure feel free to enhance anything you sumbleupon
14:57 jonalv abereles++
14:58 abereles however, not sure i have edit privilege now
14:58 jonalv oh, I am not sure I have the privilege to give you that
14:59 abereles i mean: i don't, right?
14:59 jonalv olass: edit privileges requested for the wiki!
15:08 abereles left #bioclipse
15:47 CIA-71 bioclipse.core: Arvid Berg 2.4.0 * rfa12b9c / net.bioclipse.target.platform/l​ibs/net.bioclipse.jniinchi.jar : Added native library for linux-x86 - http://bit.ly/bxXF0K
17:35 s_wolf joined #bioclipse
17:39 olass @tell abereles You should have received a wiki account by email
17:39 zarah Consider it noted.
17:42 CIA-71 bioclipse.ds: Ola Spjuth 2.4.x * r37e951e / (6 files in 3 dirs): Fixed documentation anchors for endpoints. - http://bit.ly/ddtuTv
18:02 slyrus argh... drawing 2d structures is hard...
18:09 olass slyrus: I know the feeling :)
18:10 * olass is cooking a nice BBQ-chicken
18:14 * slyrus thinks they should have let some non-chemist designers write the rules for proper 2d drawing
18:23 * edrin is going home to have some dinner, too
18:24 edrin maybe... cu later
18:24 edrin :)
19:35 olass slywhat are you using?
19:35 olass slyrus: what ae you using for drawing?

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