Camelia, the Perl 6 bug

IRC log for #bioclipse, 2010-08-13

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All times shown according to UTC.

Time Nick Message
04:44 egonw joined #bioclipse
05:23 sneumann joined #bioclipse
06:30 olass joined #bioclipse
06:35 egonw joined #bioclipse
07:09 Gpox joined #bioclipse
07:14 egonw moin
07:14 zarah saluton egonw
07:45 jonalv joined #bioclipse
07:55 egonw hi jonalv
07:58 jonalv hi egonw
07:58 samuell joined #bioclipse
07:59 egonw hi samuell
08:00 egonw how's your GSoC going?
08:00 egonw finishing up, I guess?
08:00 samuell Hello, Yes
08:00 samuell It's quite Ok ... got a list of things to fix today and tomorrow
08:02 samuell Surely there will be more bugfixing in the future ... when people start testing it ... (and we start connecting it with Bioclipse :) )
08:04 egonw I still have to reinstall a newer version...
08:04 egonw but have an earlier version on my laptop
08:04 egonw hope to demo that in Boston :)
08:05 samuell Ok, nice :)
08:08 samuell Btw, when will you be back in Uppsala?
08:48 egonw I am already :)
08:48 egonw though working from home right now
08:49 egonw I'll be at BMC on Tuesday
08:49 egonw and flying to Boston on Fri
08:55 samuell Ah ok
09:09 Juul joined #bioclipse
09:13 egonw hi Juul
09:13 egonw samuell, Juul, others: you all cought up with the main repository locations?
09:14 samuell egonw: The repos online should be the most up to date ones, yes ... (if that's what you meant?)
09:14 egonw well, that too :)
09:14 egonw but also, that you are aware of the new main reposes :)
09:18 Juul i am not :)
09:20 egonw Juul: ok. here goes... all Bioclipse repositories can now be found here:
09:20 egonw http://github.com/bioclipse
09:20 egonw if you have a repository too, you can also move it there, if you like
09:21 egonw ask jonalv or olass to make a 'team' for you
09:26 olass Juul: what state is your project in?
09:26 * olass is not really up to speed here
10:11 egonw anyone with a clever remark here on the Oracle Java Stab?
10:11 * egonw think we'll have to rewrite Bioclipse in JavaScript :)
10:20 sneumann which particular Oracle Java Stab?
10:21 CIA-71 bioclipse.brunn: jonalv jasper * r30ab4f4 / (5 files in 3 dirs): perfected the 384 wells masterplate report - http://bit.ly/adstaz
10:51 samuell sneumann: http://gigaom.com/2010/08/12/everyone-hates-goo​gle-oracle-sues-search-firm-over-android-code/
10:51 zarah samuell's link is also http://tinyurl.com/2bugh77
10:51 samuell (I suppose)
10:51 * samuell saw it on twitter
10:52 egonw sneumann: well said
10:52 * egonw is away for lunch
11:04 CIA-71 bioclipse.core: Ola Spjuth master * r41723fd / (15 files in 6 dirs):
11:04 CIA-71 bioclipse.core: Removed the BIRT plugin and feature.
11:04 CIA-71 bioclipse.core: It is succeeded by JasperReports. - http://bit.ly/9DOHJK
11:04 CIA-71 bioclipse.core: Ola Spjuth master * r8d54bf2 / net.bioclipse.target.platf​orm/target-platform.target : Removed BIRT from target platform. - http://bit.ly/aCc4tk
11:06 Juul egonw, thanks
11:07 Juul olass, ah, I was/is evaluating bioclipse for use within the BIOFAB (biofab.org) to implement a set of predictive algorithms, but we're not decided on a platform yet. Lately I've been looking at the upcoming Clotho 2 which is being built on top of the NetBeans Platform
11:09 olass Juul: sounds cool
11:09 olass let me know if I can assist in your evaluation
11:09 Juul :) thanks
11:15 masak joined #bioclipse
11:26 CIA-71 bioclipse.core: Ola Spjuth master * r7acab83 / features/net.bioclipse.core_feature/feature.xml : Removed dep on com.lowagie.itext. - http://bit.ly/b062Mq
11:44 CIA-71 bioclipse.brunn: jonalv jasper * rde99601 / (2 files):
11:44 CIA-71 bioclipse.brunn: further perfection of report.
11:44 CIA-71 bioclipse.brunn: Got rid of those pesky extra lines and some other stuff - http://bit.ly/9E3Xr0
13:16 olass joined #bioclipse
13:22 olass joined #bioclipse
13:36 olass joined #bioclipse
14:35 CIA-71 bioclipse.brunn: jonalv jasper * rce2895c / (6 files in 3 dirs): created 96 wells masterplate report - http://bit.ly/9Oi2bv
14:36 masak http://www.nytimes.com/2010/08/13/he​alth/research/13alzheimer.html?_r=3
14:36 zarah masak's link is also http://tinyurl.com/3yodd4w
14:44 CIA-71 bioclipse.ds: Ola Spjuth master * r66532c1 / (4 files in 3 dirs):
14:44 CIA-71 bioclipse.ds: Do not show empty endpoints.
14:44 CIA-71 bioclipse.ds: Also removed some sysouts. - http://bit.ly/aPHcbN
14:44 CIA-71 bioclipse.ds: Ola Spjuth master * r0cd32a3 / plugins/net.bioclipse.ds.cpdb/build.properties : Added missing models folder to build.props. - http://bit.ly/bu1wiX
14:46 egonw olass: can you please update the CDK bug report about the SDTOUT in the smarts parsing?
14:46 egonw I need your input...
14:47 olass did not understand your question
14:47 olass why not just replace the sysout with logger.debug?
14:55 egonw because I have no clue where to look for the System.out calls
14:55 egonw those I can find are deliberate
14:55 egonw and only there for specific debug tasks...
14:55 egonw so, possible... some code is still accidentally calling those debug methods
14:56 egonw but without some example output, it's hard finding where to fix the code
15:08 CIA-71 bioclipse.brunn: jonalv jasper * r2e4f196 / (4 files): change to greek encoding, now PDF can haz $\mu$ - http://bit.ly/9KEr9R
15:22 egonw moo++
15:26 CIA-71 bioclipse.brunn: jonalv jasper * r9a62957 / (2 files): one pixel graphical fix - http://bit.ly/d1ukSA
15:27 jonalv my computer seem to ask for a reboot
15:27 egonw your's too?
15:28 jonalv it's strange it's only been up 3 days
15:28 egonw sounds like Apple has been sending around security fixes in the FreeBSD kernel?
15:28 jonalv but then I did run windows today...
15:28 * jonalv closes all programs...
15:29 jonalv it's gunna take a while... :(
15:29 Juul joined #bioclipse
15:29 jonalv bbl
15:40 jonalv joined #bioclipse
15:40 jonalv oh hia
15:40 jonalv hi
15:40 zarah hi jonalv
17:24 egonw joined #bioclipse
18:17 egonw joined #bioclipse

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