Camelia, the Perl 6 bug

IRC log for #bioclipse, 2010-09-09

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All times shown according to UTC.

Time Nick Message
01:15 Juul left #bioclipse
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07:45 jonalv zarah: seen edrin?
07:45 zarah edrin was last seen 19 h 37 m 36 s ago in #bioclipse saying 'thank you'
07:54 CIA-58 bioclipse.xws4j: ospjuth master * rbed9bc6 / (2 files in 2 dirs):
07:54 CIA-58 bioclipse.xws4j: Set version to 2.2.0.v20100127
07:54 CIA-58 bioclipse.xws4j: git-svn-id: https://bioclipse.svn.sourceforge.net/s​vnroot/bioclipse/bioclipse2/trunk@11747 fcb5ba71-d80d-0410-8237-ba3920747fcc (+209 more commits...) - http://bit.ly/aU7lJU
07:55 jonalv zarah: tell edrin http://github.com/bioclipse/bioclipse.xws4j also I need you github account name in order to give you commit bit
07:55 zarah jonalv's link is also http://tinyurl.com/3yep7xs
07:55 zarah Consider it noted.
08:00 edrin joined #bioclipse
08:00 edrin hi
08:00 zarah saluton edrin
08:00 zarah edrin: You have new messages. Write '/msg zarah @messages' to read them.
08:23 egonw edrin: please tell jonalv your github account name
08:24 edrin yes, there is a problem: do I have one? I am not sure
08:32 edrin ah, I have one
08:34 edrin jonalv: my github name is "edrin"
08:44 CIA-58 bioclipse.cheminformatics: Arvid Berg master * rea8715d / plugins/net.bioclipse.cdk.ui/build.properties :
08:44 CIA-58 bioclipse.cheminformatics: Removed about entries from build.properties
08:44 CIA-58 bioclipse.cheminformatics: They where left overs form cleanup in
08:44 CIA-58 bioclipse.cheminformatics: SHA: af7e5e56f9cf8bb016ca83bab1ff14ee9e53b08e - http://bit.ly/d3mEST
09:21 annzi left #bioclipse
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09:57 egonw lunch time here
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12:15 egonw grmph... information overload...
12:15 egonw samuell: question...
12:16 samuell egonw: yes?
12:16 egonw samuell: how do a define a new namespace/prefix combo from scratch?
12:16 egonw sorry, slow typer :)
12:16 samuell no prob ...
12:16 egonw given my page in drugmet
12:16 samuell Hmm ...
12:16 egonw I want a foaf:homepage link
12:16 egonw I can grasp the foaf:homepage bit (see page)
12:16 egonw but how to actually use the proper namespace?
12:17 egonw actually... I only have foaf:weblog rigth now
12:18 egonw used the wrong predicate
12:18 samuell Ah ... well, if you add the full URI to the foaf:homepage property, on the foaf:homepage article, then u:re done
12:18 egonw btw, fikas here at SLU are good :)
12:18 samuell :)
12:18 egonw just the full predicate URI?
12:18 samuell I mean ... add the URI by using the "Original URI" proerpty. Like so:
12:19 samuell [[Original URI::http://...[full uri].../foaf:homepage]]
12:19 samuell The original uri property is understood by RDFIO, so that it can be used on export
12:19 samuell The original uri property is understood by RDFIO, so that it can be used on SPARQL/RDF export
12:19 egonw ok, can you please 'fix' my homepage?
12:19 samuell Yes, will try
12:20 samuell But it should be foaf:weblog then, right?
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12:20 egonw right
12:23 egonw samuell: but your homepage->weblog fix did not set the proper namespace, right?
12:23 samuell Now, "Original URI" will not change what is exported in the fact box etc ... :(
12:23 samuell Not sure what you mean?
12:23 egonw I'm not following you...
12:24 egonw where do I put this original URI stuff?
12:24 samuell in the foaf:weblog article ... but I already added it
12:24 samuell http://drugmet.rilspace.org​/wiki/Property:Foaf:weblog
12:24 zarah samuell's link is also http://tinyurl.com/345ythj
12:24 samuell Sorry, "Property:Foaf:weblog" it is
12:24 samuell (I used the link in the factbox)
12:25 samuell (I used the read link in the factbox to create that page)
12:25 samuell red
12:25 egonw ah, ic
12:25 egonw so, what about this export thing then?
12:25 egonw the SPARQL does not work properly?
12:26 samuell Well, export is done via the SPARQL endpoint
12:26 samuell With export, I mean when you are generating triples
12:26 samuell ... with the CONSTRUCT keyword,
12:26 samuell Then you can choose RDF/XML as output (instead of HTML or SPARQL XML resultset, which is SPARQL standard)
12:28 egonw what I meant: isn't this SPARQL supposed to work now:
12:28 egonw SELECT ?s ?o
12:28 egonw WHERE { ?s <http://xmlns.com/foaf/0.1/weblog> ?o }
12:28 egonw LIMIT 25
12:28 zarah egonw's link is also http://tinyurl.com/35e4c26
12:28 samuell Yes, strange
12:29 samuell Gotta be sth with the install... looking into it
12:29 egonw ok, thanx
12:39 jonalv left #bioclipse
12:43 samuell Something is indeed broken ... must have came in a recent commit. Will run debugger ...
13:07 egonw samuell: at bmc?
13:07 samuell egonw: No, at home (which is not far from bmc though)
13:07 egonw nothing important...
13:07 egonw was considering dropping by at bmc
13:08 egonw I think I will do that...
13:08 egonw should be there in some 30-45 minutes
13:09 samuell Ok, well ... should come by ... I might have got a form for getting key card access ... in your post box
13:09 samuell (have to bring it to the reception)
13:10 samuell (I told Agneta to put it there)
13:12 egonw left #bioclipse
13:25 * samuell found the bug in RDFIO, yay
13:27 samuell left #bioclipse
13:46 CIA-58 bioclipse.brunn: jonalv master * r0561da9 / (6 files in 6 dirs): Changed version + new update site - http://bit.ly/cV72lc
13:46 CIA-58 bioclipse.brunn: jonalv master * r7e6f970 / plugins/net.bioclipse.brunn.ui/src/net/biocli​pse/brunn/ui/editors/plateEditor/Summary.java : Merge branch 'master' of git://github.com/jonalv/bioclipse.brunn - http://bit.ly/d8h6lP
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14:08 egonw samuell: did you find the problem?
14:08 samuell egonw: Yes
14:09 samuell One, moment, I'll fix it manually in drugmet for now ... while searching for a general solution
14:09 samuell Btw, u:re at bmc ?
14:09 samuell If you let me in, I can come by the office (sitting upstairs now)
14:09 * samuell is coming down now
14:10 egonw yeah, at bmc now
14:10 egonw ok
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15:43 samuell egonw: You should add {{#set:Has type=URL}} to the Has Inchi property page
15:43 samuell Doesn't help the long URL though
15:43 samuell But it makes it look like an URL correctly in the factbox at least
15:51 egonw WHERE { <http://rdf.openmolecules.net/?InChI=1/C21H28O5/c1​-19-7-5-13(23)9-12(19)3-4-14-15-6-8-21(26,17(25)1​1-22)20(15,2)10-16(24)18(14)19/h9,14-15,18,22,26H​,3-8,10-11H2,1-2H3/t14-,15-,18+,19-,20-,21-/m0/s1> ?s ?o }
15:51 zarah egonw's link is also http://tinyurl.com/29v52gd
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16:29 CIA-58 bioclipse.statistics: Arvid Berg master * r44d3fb2 / (3 files): Added site feature - http://bit.ly/d8zXYr
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