Camelia, the Perl 6 bug

IRC log for #bioclipse, 2010-09-16

| Channels | #bioclipse index | Today | | Search | Google Search | Plain-Text | summary

All times shown according to UTC.

Time Nick Message
03:55 sneumann joined #bioclipse
04:03 egonw joined #bioclipse
04:06 sneumann left #bioclipse
04:16 Juul left #bioclipse
04:40 egonw left #bioclipse
05:10 masak joined #bioclipse
05:23 sneumann joined #bioclipse
06:24 egonw joined #bioclipse
06:43 sneumann left #bioclipse
07:01 Gpox joined #bioclipse
07:23 zarah left #bioclipse
08:07 sneumann joined #bioclipse
08:24 egonw_pele joined #bioclipse
08:24 egonw_pele moin
08:25 egonw_pele at least the network is now working :)
08:29 masak egonw++
08:34 jonalv joined #bioclipse
09:50 egonw_pele left #bioclipse
10:49 * samuell just ran this from Bioclipse:
10:49 samuell var wikiURL = "http://drugmet.rilspace.org/wiki/";
10:49 samuell smw.addTriple( "w:Cortisone", "w:is_a", "w:Molecule", wikiURL );
10:49 samuell Result: http://drugmet.rilspace.org/wiki/Cortisone
10:50 samuell :)
10:50 egonw well done!
10:52 samuell (though I see a bug now ... Original/Equivalent URIs facts should not have been created for w:Cortisone)
12:14 sneumann Is there a convenient way in BC to fetch structures from KEGG or PubChem ? Or just download and import into Workspace ?
12:15 egonw there is a pubchem manager
12:15 egonw ?pubchem
12:15 egonw in the console
12:15 sneumann ack
12:57 egonw left #bioclipse
13:27 olass joined #bioclipse
13:44 sneumann left #bioclipse
13:56 s_wolf left #bioclipse
14:31 egonw joined #bioclipse
14:36 samuell egonw: Any objection against leaking out the drugmet URL?
14:36 egonw nope
14:37 samuell Ok. Was considering to screencast the basic bioclipse->smw editing functionality, in order to publicize it a bit now during smwcon times ...
14:38 egonw left #bioclipse
14:44 egonw joined #bioclipse
14:48 olass left #bioclipse
15:42 egonw left #bioclipse
15:56 samuell One can have multiple method signatures as published methods in Sprint, right?
16:01 samuell Well, never mind ... gotta create two methods anyway ... :/
16:01 masak Sprint?
16:03 samuell Spring, sorry
16:03 samuell typo
16:04 masak one can do that.
16:05 samuell masak: Ok ... any special things one has to do?
16:05 masak no.
16:06 samuell Ok ... on a different matter... samuell/bioclipse.smw commits don't show up here on IRC although I activated CIA on github ...
16:07 samuell (not a big problem really, but)
16:11 * masak never quite figgered out how the CIA bots function
16:21 samuell Indeed, it works, cool (method overloading, or what it is called ...)
16:21 jonalv left #bioclipse
16:22 egonw joined #bioclipse
16:27 masak aye; it is.
16:27 egonw good :)
16:29 CIA-58 bioclipse.rdf: Samuel Lampa master * r2d2ea69 / plugins/net.bioclipse.rdf/src/net/bi​oclipse/rdf/business/RDFManager.java : Removing unneccessary includes - http://bit.ly/aL8Ku1
16:31 samuell Hmm ... realizing a Jena Model is not a good return format for manager methods, right ... (egonw) ?
16:31 egonw no... use the IRDFModel instead
16:32 egonw I would love a Sesame impl too :)
16:33 samuell Ok ... gotta convert then ... hmm ...
16:35 egonw will try to review the patches shortly
16:36 samuell Ok, well, now there are pending changes, so no panic hurry with that
16:36 samuell IRDFStore you mean, no?
16:37 egonw yes
16:37 samuell Ok
16:38 egonw OK, left some comments...
16:40 samuell I guess I can simply typecast a Jena Model to IRDFStore?
16:40 samuell (Looks like your typecasting the other way around in rdf manager ...)
16:44 egonw no
16:44 egonw mom
16:46 egonw just learned about a really cool tool: xournal
16:50 samuell responded to comments http://is.gd/fdBs4 and http://is.gd/fdBsP
16:51 egonw huh?
16:55 samuell responded to your github repo comments
16:56 egonw ah :) right
16:57 samuell whoaa ... kinda too tired to write good code :/
16:58 samuell =.=
17:06 samuell Throw BioclipseException if sparqlQueryString doens't contain "CONSTRUC"?
17:06 samuell T
17:07 egonw that's what reviewing is for :)
17:12 CIA-58 bioclipse.rdf: Samuel Lampa master * rd0500cf / (2 files): Check that SPARQL query contains "CONSTRUCT" keyword. More sensible progress monitor - http://bit.ly/9ZjxYf
17:12 samuell Yeah, reviewing is important
17:14 samuell And of course feel free to refactor and fix things, aka "pair programming" :)
17:14 samuell Then I'll watch and learn
17:15 * samuell gets more coffe, brb
17:15 egonw :)
17:15 egonw we'll see
17:15 egonw I'm happy if I can get my writing taks done this month
18:03 Gpox left #bioclipse
18:20 masak left #bioclipse
18:47 egonw cu tomorrow
18:52 egonw left #bioclipse

| Channels | #bioclipse index | Today | | Search | Google Search | Plain-Text | summary