Camelia, the Perl 6 bug

IRC log for #bioclipse, 2010-09-22

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All times shown according to UTC.

Time Nick Message
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05:56 olass @seen samuel
05:56 zarah I have not seen samuel
05:56 olass @seen samuell
05:57 zarah samuell was last seen 13 h 4 m 58 s ago in #bioclipse saying 'It's some work, but not as much as I thought at least'
05:57 olass samuell++ //for fixing our bugzilla
05:57 olass samuell++ //for fixing our bugzilla
05:57 olass samuell++ //for fixing our bugzilla
05:57 zarah samuell++ //for fixing our bugzilla
05:58 sneumann hi olass, is http://github.com/Abereles/Bioclipse.clustering somehow related to you ?
05:58 olass hi sneumann: yes, you could say that
05:59 olass I am sort of teaching abereles Bioclipse..
05:59 olass but he has been away for a few weeks now
05:59 olass so I don't know the current status
05:59 sneumann I have a student who could use that
05:59 sneumann is there an update site ?
05:59 olass I should send him a follow-up email
05:59 olass no, not yet
06:00 olass I don't think it is complete yet, work in progress
06:00 olass now there is a manager for clustering, but I asked about some serious API changes
06:00 olass so no View yet
06:05 sneumann now that bugzilla is back, I'll flow my queued reports
06:06 sneumann well, one of them :-)
06:06 sneumann ah, right, egonw will fix it on friday.
06:07 sneumann at least bugzilla was only a software problem
06:07 sneumann this one happened to a friend of mine
06:07 sneumann http://i37.tinypic.com/2j4rnk0.jpg
06:49 sneumann Hi, I just checked out 2.4.x from git
06:50 sneumann and get "Fragment-Host: ch.qos.logback.classic;bundle-version="0.9.20" cannot be resolved
06:50 sneumann and get "Host bundle Fragment-Host: ch.qos.logback.classic;bundle-version="0.9.20" cannot be resolved
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07:19 sneumann boa, I hardly can believe this:I just had a working BC2.4.x built from source :-)
07:19 sneumann Its always a challenge if you tune in only every few months
07:57 sneumann Now, to run moss I need rdf, and com.hp.jena is missing xerxes. Any clues ?
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09:54 olass sneumann: xerces can be problematic...
09:54 olass it should come with java
09:54 olass but there is also a bundle
09:55 olass what OS are you on?
09:55 olass are you using Java 1.6?
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10:45 sneumann olass: Ubuntu10.04, the com.hp project has java-6-sun-1.6.016, the JRE System library in the project does not contain xerces. Eclipse is a 3.5
10:46 olass Gpox: do you know if we bundle xerces as a plugin in our TP?
10:46 * olass needs to run off to a telephone conference
10:47 Gpox yes we do
10:47 sneumann there is ./bioclipse.core/externals/org.apache.xerces
10:47 olass sneumann: you should then get it via the Target Platform...
10:48 olass I guess that should be it
10:48 sneumann like
10:48 sneumann ./bioclipse.core/net.bioclipse.target.platform/l​ibs/com.springsource.org.apache.xerces-2.9.1.jar
10:48 olass if the RDF feature complains about it you might need to ask egonw..
10:48 olass I am not 100% up to speed with it
10:48 sneumann he has already a message on this :-)
10:48 olass :)
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12:15 sneumann but olass , that problem should be familiar to you: http://irclog.perlgeek.de/bi​oclipse/2010-05-17#i_2338129
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12:18 sneumann Yes, I seem to be bitten by Re: [Bioclipse-devel] RDF depends on xerces, right?
13:18 sneumann Hm, the xerces solution was to *close* the existing org.apache.xerces project
13:20 sneumann zarah @tell egonw the xerces solution was to *close* the existing org.apache.xerces project
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14:36 sneumann hi samuell
14:36 sneumann do you still have a xerces problem, as I read on bc-devel ?
14:37 sneumann I had probably the same, and fixed it by closing / removing the org.apache.xerces project in the workspace
14:44 samuell sneumann: Ah, ok, thanks
14:44 samuell Yes, I still have the problem ... I did a temporary workaround by including the jars manually in my project, but that is not very nice of course.
14:44 samuell So, thanks for the hint.
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