Camelia, the Perl 6 bug

IRC log for #bioclipse, 2010-10-18

| Channels | #bioclipse index | Today | | Search | Google Search | Plain-Text | summary

All times shown according to UTC.

Time Nick Message
04:40 sneumann joined #bioclipse
04:51 sneumann left #bioclipse
05:14 egonw_ joined #bioclipse
05:43 egonw_ left #bioclipse
05:52 egonw joined #bioclipse
05:58 egonw_ joined #bioclipse
06:01 egonw left #bioclipse
06:11 egonw_ left #bioclipse
06:11 egonw__ joined #bioclipse
06:11 egonw__ left #bioclipse
06:11 egonw joined #bioclipse
06:12 egonw left #bioclipse
07:02 Gpox joined #bioclipse
07:17 s_wolf joined #bioclipse
07:22 egonw joined #bioclipse
07:30 egonw Gpox: do you know how to 'revert' a commit...
07:30 egonw that is, apply the reverse of an existing patch...
07:30 egonw with git, that is
07:30 egonw keyword: published
07:30 egonw so, it's not something local...
07:30 egonw it's a published and shared patch that just needs reverting...
07:31 egonw oh... maybe 'git revert' does work...
07:35 mgerlich joined #bioclipse
07:37 Gpox yes, I belive it creates a commit that reverts another commit
07:46 egonw confirmed
07:50 jonalv joined #bioclipse
07:51 egonw hi jonalv
07:51 jonalv hi egonw
07:51 egonw hi zarah
07:51 egonw zarah: ?
07:51 zarah egonw: yes?
07:51 egonw ah, there you are
07:51 jonalv oh so it's monday morning an zarah is here
07:51 jonalv nice
07:51 egonw zarah: you were so silent... anything wrong?
07:51 zarah egonw: are you making fun of me?
07:52 jonalv zarah: took it easy this weekend?
07:52 zarah jonalv: excuse me?
07:52 jonalv zarah: never mind hehe
07:52 * zarah never minds
07:53 egonw left #bioclipse
07:53 egonw joined #bioclipse
08:22 egonw left #bioclipse
08:49 sneumann joined #bioclipse
08:53 masak joined #bioclipse
09:14 jonalv Gpox: You wrote net.bioclipse.cdk.ui.domain.CDKMoleculeTransfer so maybe you can help. I get'Access restriction: The type CMLWriter is not accessible due to restriction on required project org.openscience.cdk.libiocml' when I moved it to net.bioclipse.cdk.ui and add a dep to org.openscience.cdk.libiocml bundle.
09:17 Gpox you might neet do do an import-package for org.xmlcml.elemnt, the cml code leaks dependencies
09:18 Gpox possible nu.xom also
09:18 jonalv strange error message for that solution but I can try...
09:18 Gpox or maby only that one, as I said it is leaky
09:20 jonalv Gpox: org.xmlcml.cml.element
09:20 jonalv ?
09:20 Gpox might be that the org.opensience.cdk.libiocml should re-export those packages
09:20 Gpox ?
09:20 sneumann left #bioclipse
09:20 Gpox yes
09:21 * jonalv is doinga clean now, will see if that helps...
09:21 sneumann joined #bioclipse
09:21 jonalv but 'Access restriction' doesn't that mean that it doesn't export the CMLWriter in the first place?
09:23 jonalv but it exports it...
09:23 jonalv Gpox: more ideas?
09:29 sneumann left #bioclipse
09:29 jonalv Gpox: ?
09:30 Gpox don't know
09:32 Gpox might need to shake eclipse some more :)
09:32 jonalv Gpox: shake eclipse?
09:33 Gpox you know, set target platform, restart, update classpaths that sort of thing
09:33 jonalv grumble
10:14 egonw joined #bioclipse
11:11 sneumann joined #bioclipse
12:27 edrin joined #bioclipse
13:00 olass joined #bioclipse
13:17 egonw left #bioclipse
13:25 CIA-67 bioclipse.cheminformatics: jonalv HEADLESS * r2c24dc2 / (20 files in 9 dirs): removed org.eclipse.ui dep - http://bit.ly/cgQiDw
14:32 olass left #bioclipse
14:37 olass joined #bioclipse
15:25 sneumann left #bioclipse
15:57 Juul joined #bioclipse
16:24 masak left #bioclipse
16:25 jonalv left #bioclipse
16:26 Gpox left #bioclipse
16:50 edrin I'm leaving
16:50 edrin cu tomorrow/later
16:50 edrin left #bioclipse
17:04 olass left #bioclipse
17:12 egonw joined #bioclipse
17:30 Juul left #bioclipse
17:31 samuell joined #bioclipse
17:40 samuell left #bioclipse
19:00 sneumann joined #bioclipse
20:23 sneumann left #bioclipse
21:16 s_wolf left #bioclipse
21:17 s_wolf joined #bioclipse
21:23 egonw s_wolf: does ipb have mzML 1.1 files?
21:23 egonw if so: check out this question: http://biostar.stackexchange.com/questions​/2964/looking-for-downloadable-mzml-files
21:23 zarah egonw's link is also http://tinyurl.com/32gx3yw
23:16 egonw left #bioclipse

| Channels | #bioclipse index | Today | | Search | Google Search | Plain-Text | summary