Camelia, the Perl 6 bug

IRC log for #bioclipse, 2011-02-04

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All times shown according to UTC.

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08:48 * samuell is having fun repairing eclipse workspaces
08:49 egonw hahahaha
08:49 egonw you'd be the first
08:49 samuell I guess so :)
09:30 egonw Gpox: ping... you know how to set up the target platform for guave properly, if I start using it instead of the old com.google.commons?
09:31 egonw anyways... I am using the other, because that was a dep for the google docs API
09:35 Gpox the guava stuff has an update site so adding it to the target platform is trivial
09:35 Gpox the http://code.google.com/p/gdata-java-client/ seams to be missing osgi metadata though
09:35 egonw yeah, so we have to stick with the three jars for that
09:36 egonw Gpox: can you make it so?
09:37 egonw then I will have a look at replacing google.collect with guava
09:37 Gpox If you use Import-package it is easy to switch out the bundles
09:38 egonw OK, will do that now
09:44 egonw Gpox: actually... the classes are not used directly...
09:45 egonw so, only had to add com.google.guava to the feature...
09:45 egonw now, need to wait for your platform patch to reset target platform and test
10:36 CIA-91 bioclipse.core: Egon Willighagen master * r235f380 / net.bioclipse.target.platf​orm/target-platform.target : Added the Guava update site - http://bit.ly/gMdbAE
10:36 egonw Gpox: I think I I figured out how to do it...
10:36 egonw Gpox: please check
10:45 olass egonw: have you had any progress with loading libs in R? Martin is asking..
10:46 egonw yes, that actually does seem to work
10:46 egonw threading is the next big thing to do, I think
10:46 egonw olass: btw, figure plotting stopped working for me too
10:46 egonw no clue why
11:09 olass will try here...
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12:24 zarah egonw was last seen 1 h 20 m 54 s ago in #farmbio saying 'created a nice queue'
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12:24 zarah egonw_ was last seen 3 h 41 m 47 s ago in #farmbio saying 'cute'
12:24 olass @whereis egonw
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13:50 egonw Gpox: you got a clue why bioclipse.cheminformatics fails to build on Hudson?
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14:30 egonw Gpox: ERROR: An internal error occurred during: "Refreshing external folders".
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14:55 Gpox egonw: Error: The project was not built since its build path is incomplete. Cannot find the class file for net.bioclipse.core.api.domain.IBioObject
14:55 Gpox don't know why that should only be in the HEADLESS branch
14:55 egonw right...
14:55 egonw no, it's not only there
14:55 egonw it's the core thing, not?
14:57 egonw https://github.com/bioclipse/bioclipse.core​/blob/master/plugins/net.bioclipse.core/src​/net/bioclipse/core/domain/IBioObject.java
14:57 egonw so, why does Hudson think it's not there?
14:57 egonw ok, rebuilding bioclipse.core
14:57 Gpox .api.
14:58 egonw oh.... !
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