Camelia, the Perl 6 bug

IRC log for #bioclipse, 2011-02-12

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All times shown according to UTC.

Time Nick Message
00:27 Juul left #bioclipse
08:42 egonw joined #bioclipse
12:32 CIA-91 bioclipse.cheminformatics: Egon Willighagen master * r1561731 / (2 files in 2 dirs): Added the build path '.', hoping that will solve the /testFiles not found problem when running the tests - http://bit.ly/fQTQxX
12:39 CIA-91 org.openscience.cdk: Egon Willighagen master * r0efa907 / (5 files in 3 dirs): Added the new signatures 1.0 jar, a dependency of the new signatures module - http://bit.ly/eHsjy2
12:39 CIA-91 org.openscience.cdk: Egon Willighagen master * r24ec804 / (664 files in 224 dirs): Uploaded bundles for CDK 1.3.8 - http://bit.ly/gjAf4F
13:44 CIA-91 bioclipse.core: Egon Willighagen master * r176b8be / (8 files in 5 dirs): Uploaded CDK 1.3.8 - http://bit.ly/gtxRhN
16:33 sneumann_ joined #bioclipse
16:48 CIA-91 org.openscience.cdk: Egon Willighagen cdk-jchempaint * r9450cae / (14 files in 14 dirs): Import XOM and CMLXOM instead of depending on it (+6 more commits...) - http://bit.ly/fGHLEX
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17:16 CIA-91 org.openscience.cdk: Arvid Berg bioclipse2.6 * r315c350 / features/org.openscience.cdk_site/feature.xml : Changed inchi-bundle to sinchi and removed hardcoded version from site-feature (+5 more commits...) - http://bit.ly/fdiOH1
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18:02 samuell joined #bioclipse
18:02 samuell Hello egonw
18:03 samuell Just checked out the source code for bioclipse.sdk (I realize I never did that before ... huh) ...
18:04 samuell What is found under net.bioclipse.doc.developers ... that is basiclly what you are currently using to generate docs, right?
18:19 egonw hi samuell
18:19 egonw good question
18:19 egonw I actually do not remember :)
18:19 egonw but something like that, I guess
18:19 egonw it might indeed actually merge nicely with your current doc work, I guess
18:20 egonw oh... and I got a book from you...
18:20 egonw sem web for the working ontologist
18:20 egonw found it after the house move... really sorry about that :(
18:21 jonalv joined #bioclipse
18:28 egonw hi jonalv
18:28 jonalv hi egonw
18:32 CIA-91 org.openscience.cdk: Egon Willighagen bioclipse2.6 * r5749009 / plugins/org.openscience.cdk.control/src/org/op​enscience/cdk/controller/IMouseEventRelay.java : Added two methods that got lost :( to handle mouse wheel events - http://bit.ly/faiR7c
18:46 * egonw going to cause havock on Hudson
18:46 egonw oh, yes he is...
18:46 egonw red is the new blue
18:47 jonalv branches are nice...
18:47 egonw oh, crap... he's not ...
18:47 jonalv egonw: what are you doing? :)
18:47 egonw Gpox-- (for making private branches for Hudson :)
18:48 jonalv huh?
18:48 egonw jonalv: updating Bioclipse master to CDK 1.3.8 + CDK-JChemPaint 17
18:48 jonalv ah
18:48 jonalv egonw++
18:48 egonw Gpox++ created a secret hudson branch :)
18:49 egonw https://github.com/goglepox/or​g.openscience.cdk/tree/hudson
18:49 egonw oh, but there is no new patches there...
18:49 egonw good... here goes...
18:51 egonw ok, rebuilding org.openscience.cdk on hudson
18:52 CIA-91 bioclipse.cheminformatics: Egon Willighagen master * rd265796 / (13 files in 10 dirs): Updated for CDK 1.3.8 and CDK-JChemPaint 17 (in the bioclipse2.6 branch of org.openscience.cdk) - http://bit.ly/ff5V04
18:52 egonw and now pushing the matching updates
18:52 CIA-91 bioclipse.core: Egon Willighagen master * rbb7557f / (2 files): Removed old JNI-InChI from target platform (see bug #3021 - http://bit.ly/fkgWOC
18:52 zarah bug #3021 | http://tinyurl.com/5rdh9c5
18:55 CIA-91 bioclipse.ds: Egon Willighagen master * r0cc7c5c / plugins/net.bioclipse.ds.ui/src/ne​t/bioclipse/ds/ui/ImageHelper.java : Updated for org.openscience.cdk bioclipse2.6 with CDK-JChemPaint 17 - http://bit.ly/fB98Du
18:56 CIA-91 bioclipse.ons: Egon Willighagen master * r2186610 / (2 files in 2 dirs): Updated for CDK 1.3.8 - http://bit.ly/dU609K
19:03 egonw oh goodies... look at all that red
19:56 CIA-91 org.openscience.cdk: Arvid Berg bioclipse2.6 * r1c5f52f / (2 files): Updated bundle references for xom and cmlxom - http://bit.ly/h6LXqN
19:56 CIA-91 org.openscience.cdk: Arvid Berg bioclipse2.6 * r868ce64 / features/org.openscience.cdk_site/feature.xml : Removed ioformats and annotation from cdk feature - http://bit.ly/gopx71
19:56 CIA-91 org.openscience.cdk: Arvid Berg bioclipse2.6 * racdda26 / features/org.openscience.cdk_site/feature.xml : Updated version of site to 1.3.5.0bioclipse1 - http://bit.ly/etyEHR
19:58 egonw ok, another go...
19:58 egonw digged up some more patches by arvid
20:01 CIA-91 org.openscience.cdk: Egon Willighagen bioclipse2.6 * r6a3385d / features/org.openscience.cdk_feature/feature.xml : Remove org.openscience.cdk.log4j - http://bit.ly/f8MHiw
20:16 CIA-91 org.openscience.cdk: Egon Willighagen bioclipse2.6 * r96539bb / features/org.openscience.c​dk_site/buckminster.cspex : Removed unused log4j - http://bit.ly/f4rqTB
21:34 egonw damn...
22:09 egonw ok, one down
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22:35 samuell egonw: Ok! (reg. bioclipse sdk code), and no worries (reg. the book) :)
22:35 * samuell was away
22:35 egonw yeah, I noted :)
22:36 samuell :)
22:40 * samuell is grabbing some coffe
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