Camelia, the Perl 6 bug

IRC log for #bioclipse, 2011-02-14

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All times shown according to UTC.

Time Nick Message
06:07 egonw joined #bioclipse
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07:14 sneumann joined #bioclipse
07:56 Gpox joined #bioclipse
08:00 egonw hi Gpox
08:01 egonw Gpox: let me know you have time for a short update...
08:01 egonw Gpox: I have been hacking on Hudson jobs
08:14 mgerlich joined #bioclipse
08:17 Gpox egonw: ok, whats the problem
08:17 egonw hahahaha
08:17 egonw it's not that bad really... I got all blue again in the end...
08:17 egonw I was also trying to the cheminformatics.test blue
08:17 * egonw did not cause that red
08:18 egonw so, looked at the failing unit tests...
08:18 egonw some are due to /testFiles/ not being available
08:18 egonw found one genuine bug, which I fixed
08:19 egonw so, marked tests to fix with @Ignore (replacing @Test)  (with Pelezilla entry)
08:19 egonw so, all tests are blue
08:19 egonw but the job is still red...
08:19 egonw this has something to do with the deployment of the update site, it seems
08:19 egonw when you have time later this week, perhaps you can have a look at it, and see if there is something obvious
08:19 egonw ... and ...
08:20 egonw the other thing, that is more important for you:
08:20 egonw I have created a bioclipse2.6 branch for org.openscience.cdk
08:20 egonw but several .rmap and .cquery files still mention bioclipse2.4
08:20 egonw it does not really seem to cause trouble, but something you might want to take notice of
08:21 egonw otherwise, I will try to set up a hudson job for bioclipse.opentox this week
08:35 Gpox net.bioclipse.jmol has this problem when refreshing it An internal error occurred during: "Refreshing external folders".
08:35 Gpox java.lang.NullPointerException
08:39 s_wolf joined #bioclipse
08:42 egonw yes, but that has been around for quite a while already
08:42 egonw that's nothing new
08:46 Gpox I made it go away but now I have compile errors in net.bioclipse.jmol.cdk instead
08:48 egonw what do these look like?
08:52 Gpox org.jmol.api.JmolSelectionListener cannot be resolved
08:52 Gpox indirect reference from .class files
08:53 egonw weird...
08:53 egonw how did you make those refresh ext folder things go away?
08:53 egonw my work this weekend did not touch Jmol
08:55 Gpox <classpathentry exported="true" kind="lib" path="jars/Jmol.jar" sourcepath="/Jmol"/>
08:55 Gpox +       <classpathentry kind="lib" path="jars/Jmol.jar"/>
08:56 Gpox the exported entry is gone so that might be it
08:56 olass joined #bioclipse
08:56 egonw when did that happen?
08:56 egonw crap... Gpox, that's an unwanted change indeed...
08:56 egonw let me check here...
08:57 Gpox <classpathentry kind="lib" path="jars/Jmol.jar" exported="true"/> works
08:58 Gpox might be the sourcepath entry, the starting / might make it look in the root folder of the workspace
08:58 egonw ummm... my .classpath (the on in master) does seem to have the exported=true
08:59 egonw verifying on GitHub
08:59 egonw https://github.com/bioclipse/biocli​pse.cheminformatics/blob/master/plu​gins/net.bioclipse.jmol/.classpath
08:59 egonw Gpox: what commit was that?
09:02 Gpox 13d312ef4f56eae41fd025023464b0fbedb10e51 ?
09:03 Gpox egonw: sorry what do you mean?
09:03 egonw the master branch does export the Jmol.jar already...
09:04 egonw Gpox: that patch is from 2008! ...
09:04 egonw Gpox: what branch are you looking at?
09:05 Gpox yes the sourcepath="/Jmol" seams to be the problem removing it and the refresh go away
09:08 egonw ah, not the exported...
09:08 egonw does not cause problems here, but that's Eclipse :)
09:08 egonw pushing
09:09 CIA-91 bioclipse.cheminformatics: Egon Willighagen master * r2bf605a / plugins/net.bioclipse.jmol/.classpath : Removed source path attrib - http://bit.ly/fKatvJ
09:09 egonw rebuilding
09:09 egonw Gpox: this makes sense... I will remember this when I see more of those refresh folder issues
09:10 egonw test.cheminformatics is now also rebuilding
09:15 egonw ok, still no deployed artifacts
09:15 egonw for test.cheminfo
09:15 egonw CSpec net.bioclipse.ui.business:​osgi.bundle$2.4.0.20100709 has no  action, group, or local artifact named java.binaries
09:16 egonw Gpox: see the last 20-ish lines: http://pele.farmbio.uu.se/hudson/job/Biocl​ipse.test.chemoinformatics/42/consoleText
09:16 zarah egonw's link is also http://tinyurl.com/5t7apcw
09:32 egonw Gpox: and I think I have been hacking in the wrong .rmap and .cquery files...
09:34 * egonw would really love to have these in a git repos...
09:34 egonw Gpox: can we please?
09:36 Gpox egonw: you know how test.chemoinformatics dose not deploy an artifact well so dose test.core and test.chemoinformatics needs net.bioclipse.core.test, right now it is using a old version of test.core
09:37 egonw deployment is blocked until those are fixed?
09:39 Gpox do you have a need for the chemoinformatics tests in a p2 repository?
09:40 egonw no, not at this moment (I love to be able to ask users to run a test suite at their platform at some point), but would love the job to just go blue for now, so that red is a clear indication that a unit test failed
09:40 egonw Gpox: would that be solved by just removing the deployment line in the hudson config ?
09:41 egonw that is...
09:41 egonw remove the third 'command':
09:41 egonw perform foo#site_p2
09:41 egonw one sec
09:42 Gpox now it is blue
09:42 Gpox and yes that wil fix it
09:42 egonw Gpox: you replaced that line with a junit command, correct?
09:43 Gpox no I put a # in front of it
09:43 egonw OK :)
09:43 egonw Gpox++
09:43 Gpox and untickted the archive artifact
09:44 egonw yeah, I understand now how it works
09:44 egonw well done!
09:44 egonw and thanx for the detail!
09:51 egonw Gpox: I'm looking at the failing unit tests of core now
09:54 CIA-91 bioclipse.core: Egon Willighagen master * r52bf6af / plugins/net.bioclipse.ui.business.te​sts/src/net/bioclipse/ui/business/te​sts/AbstractUIManagerPluginTest.java : Ignore tests using '/Virtual' until rewritten - http://bit.ly/hORAjz
10:00 egonw @pz 2035
10:00 zarah http://pele.farmbio.uu.se/bu​gzilla3/show_bug.cgi?id=2035
10:00 egonw @pz 3035
10:00 zarah http://pele.farmbio.uu.se/bug​zilla36/show_bug.cgi?id=3035
10:00 egonw @pz 3025
10:00 zarah http://pele.farmbio.uu.se/bug​zilla36/show_bug.cgi?id=3025
10:01 egonw right.. hello world
10:01 egonw Gpox:  I'll close that last report now :)
10:02 egonw Gpox: please also have a look at #3024
10:02 egonw @pz 3024
10:02 zarah http://pele.farmbio.uu.se/bug​zilla36/show_bug.cgi?id=3024
10:02 egonw and the related 3021 really
10:02 egonw @pz 3021
10:02 zarah http://pele.farmbio.uu.se/bug​zilla36/show_bug.cgi?id=3021
10:02 egonw @pz inchi
10:02 zarah [3021] JNI-InChI in target platform n... http://tinyurl.com/5rdh9c5
10:02 zarah [3024] Check and potentially fix InCh... http://tinyurl.com/69yyv35
10:02 zarah Entire list at http://tinyurl.com/69f6q5l
10:02 egonw zarah++
10:25 CIA-91 bioclipse.opentox: Egon Willighagen master * raaffe3c / (4 files): Added an Bioclipse-OpenTox update site - http://bit.ly/gd18E5
10:28 CIA-91 bioclipse.opentox: Egon Willighagen master * rebbabab / features/net.bioclipse.opentox_site/feature.xml : Added dependencies on bioclipse core and rdf - http://bit.ly/ffpFyj
10:28 CIA-91 bioclipse.opentox: Egon Willighagen master * rd684765 / (7 files in 3 dirs): Updated for the move of IStringMatrix from rdf to core - http://bit.ly/heib5a
10:29 egonw ok, bioclipse.core is now deployed
10:29 egonw crap
10:29 egonw I mean, bioclipse.opentox
10:40 olass egonw++
10:42 CIA-91 bioclipse.core: Egon Willighagen master * r8bbbdfc / plugins/net.bioclipse.webservices.tests​/src/net/bioclipse/webservices/tests/Ab​stractWebservicesManagerPluginTest.java : Disabled tests for now, pending a fix for finding javax.mail - http://bit.ly/emt7gM
10:42 * egonw hates red
11:04 CIA-91 bioclipse.core: Egon Willighagen master * r344d523 / (2 files in 2 dirs): Added missing (minimal) unit testing - http://bit.ly/dLIZmb
11:07 egonw good, fixed one failing unit test
11:07 egonw two more to go
11:08 egonw hahahahah
11:08 egonw expected:<4> but was:<4.0>
11:08 egonw well, I guess I can update that unit test :)
11:14 egonw last one...
11:20 CIA-91 bioclipse.core: Egon Willighagen master * r193b173 / plugins/net.bioclipse.scripting.tests/src/ne​t/bioclipse/scripting/ScriptingTestCase.java : Fixed unit test: it return '4' now, rather than '4.0', and switched the values to have the expected value first, as JUnit prescribes - http://bit.ly/dQ2nIt
11:20 CIA-91 bioclipse.core: Egon Willighagen master * r9668f28 / plugins/net.bioclipse.ui.tests/src/net/bi​oclipse/ui/tests/feature/FeatureTest.java : Disable unit test until all copyright violations are fixed: http://pele.farmbio.uu.se/bug​zilla36/show_bug.cgi?id=3027 - http://bit.ly/gs6XOQ
11:27 CIA-91 bioclipse.core: Egon Willighagen master * ra3bbe0d / features/net.bioclipse.core.t​ests_feature/build.properties : Added launch files to the binary builds - http://bit.ly/dLwqj2
11:57 egonw java.lang.NoClassDefFoundError: org/hamcrest/SelfDescribing
12:03 egonw Gpox: I assume the core.tests_feature does need to end up on an update site? or can it be used as dependency anyway?
12:05 Gpox it does becuase there is some shared code that is needed by the other manager coverage tests
12:07 egonw right
12:07 egonw that's what I was thinking...
12:07 egonw can we brainstorm about why it fails right now?
12:07 egonw http://pele.farmbio.uu.se/hudson/job​/Bioclipse.test.core/51/consoleText
12:07 zarah egonw's link is also http://tinyurl.com/5sqbnm5
12:07 egonw CSpec org.eclipse.ui:osgi.bundle$3.6.1.M20100826-1330 has no  action, group, or local artifact named java.binaries
12:09 olass left #bioclipse
12:13 CIA-91 bioclipse.core: Egon Willighagen master * r4981f78 / plugins/net.bioclipse.core.te​stsuite/META-INF/MANIFEST.MF : Removed versioning - http://bit.ly/dJlrqx
12:26 egonw Gpox: any clue on how to fix that problem?
12:26 egonw it seems the last issue left...
12:34 Gpox egonw: no, I wil have to think about it. It probably tries to publish that plugin to the update site but it shouln't do that
12:38 egonw Gpox: so, what defines what should be published on the update site?
12:39 * egonw is trying what happens if he defines a dependency of core.tests_feature on core_feature
12:40 egonw the eclipse stuff already being in core_feature might trigger Buckminster to realize the org.eclipse.* stuff doesn't need to end up on the core.tests_feature update site
12:41 egonw Gpox: there is no core.tests_site !
12:41 egonw or?
12:41 * egonw is checking...
12:42 * egonw is creating an update site
12:43 CIA-91 bioclipse.core: Egon Willighagen master * rfacea92 / (3 files): Added a Core Tests update site - http://bit.ly/eI3PXx
12:43 Gpox it uses the test_feature as site to with site.include.top=true
12:45 egonw I can always remove the site again
12:45 egonw rebuilding to see what happens
12:45 * egonw feels empirical
12:51 olass joined #bioclipse
13:05 egonw Gpox: ping
13:09 Gpox egonw: pong
13:09 egonw the effect of using an update site is diffferent...
13:10 egonw not sure if helpful, but different nevertheless ...
13:10 egonw http://pele.farmbio.uu.se/hudson/job​/Bioclipse.test.core/57/consoleText
13:10 zarah egonw's link is also http://tinyurl.com/6ywt3hw
13:10 egonw "No suitable provider for component net.bioclipse.core.tests_site:eclipse.feature was found in resourceMap"
13:10 egonw which makes sense, I guess...
13:10 egonw trying to understand why it is looking for that in the rmap
13:13 egonw does it make sense to you?
13:16 Gpox because someone told it to
13:16 * egonw wonders who that was :)
13:17 egonw OK, I'll revert that stuff... and let the Buckmister thinking to Gpox
13:20 CIA-91 bioclipse.core: Egon Willighagen master * r3395346 / (3 files):
13:20 CIA-91 bioclipse.core: Revert "Added a Core Tests update site"
13:20 CIA-91 bioclipse.core: This reverts commit facea920705e875ee64dd9198bf4f89eb9d92ef4. - http://bit.ly/gnAzPn
13:26 egonw Gpox: I reverted it...
13:26 egonw Gpox: interestingly... it's complaining about something 100% different...
13:26 egonw not the original problem...
13:26 egonw but now it fails on net.bioclipse.browser...
13:27 egonw /home/hudson/tools/buckminster/configuration​/org.eclipse.osgi/bundles/79/1/.cp/org/eclip​se/buckminster/pde/antscripts/build.xml:111: Invalid Manifest: /home/hudson/jobs/Bioclipse.test.co​re/workspace/plugins/net.bioclipse.​browser.tests/META-INF/MANIFEST.MF
13:27 egonw which indeed contains two lines!!!
13:27 egonw why did it not fail on that before???
13:28 * egonw is fixing that problem
13:29 CIA-91 bioclipse.core: Egon Willighagen master * rbd69211 / plugins/net.bioclipse.browse​r.tests/META-INF/MANIFEST.MF : Merged two Import-Package: lines - http://bit.ly/gPmaFo
13:37 jonalv joined #bioclipse
13:43 egonw Gpox: this is good!
13:43 egonw Gpox: this is finding bugs!
13:49 jonalv egonw. Gpox: sounds great, what are you guys doing? :)
13:49 egonw fixing stuff in master to get Hudson color more blue
13:50 CIA-91 bioclipse.core: Egon Willighagen master * r9a3fa72 / plugins/net.bioclipse.busine​ss.test/META-INF/MANIFEST.MF : Merged two Import-Package: lines - http://bit.ly/hK5aGQ
13:52 jonalv egonw++
13:53 egonw yes!
13:53 egonw it's blue
13:53 egonw Gpox: I did it...
13:53 egonw Gpox: eat that!
13:53 jonalv *lol*
13:54 egonw Gpox++ (for all the cool config examples egonw could cherry-pick from!)
13:58 Gpox egonw: are you editing the files at http://pele.farmbio.uu.se/buckminster-web ?
13:59 egonw yes
13:59 egonw very sporadically
13:59 egonw that's why I like it to be in a git repos
14:00 Gpox that could be a problem. because it is alrayd in a git repo that is checked out to that address. Your chagned will most likly be overwritten when I push new changes
14:01 egonw cool :)
14:01 egonw I touched/changed these files:
14:02 egonw chemoinformatic.tests.cquery core.test.cquery
14:02 egonw and added: opentox.cquery
14:03 egonw but I think core.test.cquery is obsolete
14:03 egonw I added that for the core.tests update site...
14:03 egonw and did not remove it because I was not sure it was really new
14:04 egonw Gpox: so, if core.test.cquery is not in your git repos, and can be removed
14:05 Gpox why would that be obsolete
14:05 egonw because it's not used
14:06 Gpox I got opentox.cquery and core.test.rmap that is not in my repo
14:06 egonw right
14:06 egonw the first is for bioclipse.cquery and should enter the repos
14:07 egonw Gpox: crap... you're right...
14:07 egonw it's that core.tests.rmap that I copied...
14:07 * egonw misses 'git status'
14:08 egonw Gpox: please consider making that checkout a git repos...
14:09 egonw by doing: git push ssh://pele.farmbio.uu.se/var/www/buckminster-web/
14:22 CIA-91 bioclipse.rdf: Egon Willighagen master * r838ce70 / features/net.bioclipse.rdf_feature/feature.xml : Fixed a typo - http://bit.ly/euqhtV
14:29 CIA-91 bioclipse.rdf: Egon Willighagen master * r0158b95 / (3 files in 3 dirs): Some tuning of the RDF test feature - http://bit.ly/faOUJ4
14:42 egonw jonalv: ping
14:42 jonalv egonw: you pang?
14:42 egonw jonalv: do you mind if I have your .launch file?
14:42 egonw jonalv: do you mind if I hack your .launch file?
14:42 jonalv egonw: how do you mean?
14:42 egonw see commit d2b7c174
14:43 egonw features/net.bioclipse.rdf.test​_feature/AllPluginTests.launch
14:43 jonalv egonw: no, not really, you are free to do that
14:43 egonw it looks a bit complicated :)
14:43 jonalv whatever 'that' is
14:43 jonalv egonw: in what repo?
14:43 jonalv egonw: should I look at that commit I mean
14:43 egonw what do you think ?
14:44 egonw no, you already said I could hack it
14:44 jonalv google d2b7c174
14:44 egonw that's enough for me
14:44 zarah jonalv: No hits.
14:44 egonw features/net.bioclipse.rdf.test_feature
14:44 egonw that might have given a hint :)
14:44 jonalv egonw: I am still a bit curious about what you are doing thouigh... :)
14:44 egonw removing one last red dot
14:44 egonw then I'm done
14:44 egonw the rest is BSLRunner stuff
14:44 egonw post 2.6
14:45 egonw oh, and hivdrc
14:45 egonw almost a clear sky over hudson bay
14:45 jonalv egonw++ cool
14:46 egonw then I can turn on email alerts for when bioclipse.cheminfo (*) breaks
14:46 jonalv egonw: once I rebase HEADLESS on master maybe those 2.6 stuff will be bluer as well
14:46 egonw yeah, please give it a try
14:47 jonalv yea, I have a huge pile of lab repports for the moment though... :(
14:47 jonalv or, rather it's a virtual pile, since they are on my computer
15:13 CIA-91 bioclipse.rdf: Egon Willighagen master * reee8575 / features/net.bioclipse.rdf.test​_feature/AllPluginTests.launch : Rewritten launch configuration based on the working cheminf one - http://bit.ly/fO4c7Y
15:18 CIA-91 bioclipse.rdf: Egon Willighagen master * r9d714aa / features/net.bioclipse.rdf.test​_feature/AllPluginTests.launch : Missed on reference to cheminformatics.test - http://bit.ly/fAxJBI
15:26 sneumann left #bioclipse
15:35 CIA-91 bioclipse.rdf: Egon Willighagen master * r4c3f3b0 / (2 files in 2 dirs): Some classpath fixes - http://bit.ly/g3t3dn
15:40 CIA-91 bioclipse.rdf: Egon Willighagen master * reefb322 / features/net.bioclipse.rdf.test​_feature/AllPluginTests.launch : Proper plugin - http://bit.ly/h2SbHt
15:51 egonw ok, rdf.tests done too
15:57 egonw oh... it's yellow now...
15:57 egonw haven't seen that before...
16:04 jonalv egonw++
16:05 CIA-91 bioclipse.rdf: Egon Willighagen master * r153ad7c / plugins/net.bioclipse.pellet.tests​/src/net/bioclipse/pellet/tests/Ab​stractPelletManagerPluginTest.java : I can at least test if it runs at all - http://bit.ly/g3KyX2
16:05 CIA-91 bioclipse.rdf: Egon Willighagen master * r13a65af / plugins/net.bioclipse.rdf.tests/src/net/bioclip​se/rdf/tests/AbstractRDFManagerPluginTest.java : Ignore test for now, as it uses /Virtual - http://bit.ly/hhf9ze
16:11 CIA-91 bioclipse.rdf: Egon Willighagen master * rd82bbf3 / plugins/net.bioclipse.pellet.tests​/src/net/bioclipse/pellet/tests/Ab​stractPelletManagerPluginTest.java : Ignore test for now, as it uses /Virtual - http://bit.ly/ht4MmW
16:14 olass left #bioclipse
16:15 CIA-91 bioclipse.rdf: Egon Willighagen master * rdc05e56 / plugins/net.bioclipse.pellet.tests​/src/net/bioclipse/pellet/tests/Ab​stractPelletManagerPluginTest.java : Argg... fixed previous commit by ignoring the right test :( - http://bit.ly/gkFmzT
16:18 egonw excellent
16:18 egonw now only bioclipse.product is red :)
16:26 jonalv nice
16:26 jonalv I guess Gpox will fix that soon too?
16:26 jonalv :)
16:27 egonw it seems he is exploring what got it broken
16:28 egonw Gpox: I enabled githubweb for several projects
16:28 egonw so that changes nicely link to GitHub commit messages
16:28 egonw "CSpec org.openscience.cdk.annotation:os​gi.bundle$1.3.8.0cdkjchempaint17 has no  action, group, or local artifact named bundle.jars"
16:29 egonw I still have no clue what that message means...
16:31 egonw they are properly deployed at the bioclipse.core update site -> http://pele.farmbio.uu.se/hudson/job/Bioc​lipse.core/lastSuccessfulBuild/artifact/b​uckminster.output/net.bioclipse.core_site​_1.0.0-eclipse.feature/site.p2/plugins/
16:31 zarah egonw's link is also http://tinyurl.com/6ekoo5r
16:31 egonw they := org.openscience.cdk.annotation and .ioformats
16:33 Gpox and from org.openscience.cdk too?
16:34 egonw they should be removed in the bioclipse26 branch
16:34 egonw checking
16:35 egonw ah...
16:35 egonw they should, but are not :/
16:35 egonw hang on
16:35 egonw forgot to port that patch
16:35 egonw sorry
16:37 CIA-91 org.openscience.cdk: Egon Willighagen bioclipse2.6 * r5054029 / (113 files in 12 dirs): Removed .annotation and .ioformats which are found in the bioclipse.core repository - http://bit.ly/eaUVYq
16:37 egonw rebuilding
16:38 egonw Gpox: removed them, but they are still referenced in org.openscience.cdk.rmap
16:38 egonw will fix that now...
16:39 egonw but you'll have to update your git repos too
16:39 jonalv http://xkcd.com/859/ xkcd++
16:39 egonw ERROR   No suitable provider for component org.openscience.cdk.annotation:osgi.bundle was found in resourceMap http://pele.farmbio.uu.se/buckm​inster/org.openscience.cdk.rmap
16:40 egonw mmm
16:40 egonw ah, the other way around...
16:41 egonw Gpox: that org.openscience.cdk.rmap needs to now about the bioclipse.core update site...
16:41 egonw oh... ouch
16:41 egonw recursivity...
16:42 egonw Gpox: got a brilliant idea?
16:46 egonw one idea is to keep them there again, at the expense that people will always have to checkout org.openscience.cdk, even for just bioclipse.core
16:47 Gpox the bioclipse.core.rmap should take care of that for now
16:50 egonw yeah, cool
16:51 egonw those .rmap and .cquery files are still cryptic to me
16:56 egonw ok, so how is the bioclipse.core.rmap going to fix the org.openscience.cdk build fail again?
17:13 egonw oh, crap
17:13 egonw of course
17:14 Gpox you are right it can't it is on a separate system so to speak.
17:15 egonw forgot to push this:
17:15 CIA-91 org.openscience.cdk: Egon Willighagen bioclipse2.6 * reeb201b / features/org.openscience.cdk_feature/feature.xml : Removed .annotation and .ioformats from the feature too - http://bit.ly/ihKq9Q
17:16 Gpox I synced the version of io and annotaion to match, and that is how I got around it before
17:16 egonw how did that synching work?
17:18 egonw that patch did not help, btw
17:22 Gpox Found two entries for component org.openscience.cdk.annotation:osgi.bundle. Version 1.3.5.0bioclipse1 located at /home/hudson/jobs/target_platform/builds/2011-02​-12_18-53-18/archive/targetPlatform/plugins/org.​openscience.cdk.annotation_1.3.5.0bioclipse1.jar and version 1.3.8.0cdkjchempaint17 at /home/hudson/jobs/target_platform/builds/20​11-02-12_18-53-18/archive/targetPlatform/pl​ugins/org.openscience.cdk.annotation_1.3.8.
17:22 Gpox I suspect it might be a caching issue but I can't look into it right now
17:23 egonw np
17:23 * egonw is getting dinner too now
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18:37 egonw OK, screw developer friendlyness
18:37 egonw Eclipse will do ever worse anyway
18:38 CIA-91 org.openscience.cdk: Egon Willighagen bioclipse2.6 * ra5e3dca / features/org.openscience.cdk_feature/feature.xml :
18:38 CIA-91 org.openscience.cdk: Revert "Removed .annotation and .ioformats from the feature too"
18:38 CIA-91 org.openscience.cdk: This reverts commit eeb201b88df28a07070783c0e8e1c8ee04a9a619. - http://bit.ly/gRhKTN
18:38 CIA-91 org.openscience.cdk: Egon Willighagen bioclipse2.6 * r544a1cc / (113 files in 12 dirs):
18:38 CIA-91 org.openscience.cdk: Revert "Removed .annotation and .ioformats which are found in the bioclipse.core repository"
18:38 CIA-91 org.openscience.cdk: This reverts commit 505402958acc4fc0c5c7c1640b127382bad14afa. - http://bit.ly/gtFHOR
20:21 egonw http://chem-bla-ics.blogspot.com/2011/02/t​hings-are-looking-blue-for-bioclipse.html
20:22 zarah egonw's link is also http://tinyurl.com/669edqe
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20:51 olass_ is now known as olass
20:53 CIA-91 bioclipse.chembl: Egon Willighagen master * r8e03cfc / (4 files): Added an update site - http://bit.ly/i2vUl5
20:54 olass left #bioclipse
21:01 CIA-91 bioclipse.chembl: Egon Willighagen master * ra75173f / features/net.bioclipse.chembl_site/feature.xml : Removed feature from different update site and fixed metadata - http://bit.ly/hfAvVj
21:07 CIA-91 bioclipse.moss: Egon Willighagen master * r35dfd4c / (4 files): Added an update site - http://bit.ly/ie1V5h
21:17 CIA-91 bioclipse.moss: Egon Willighagen master * r376e0b5 / plugins/net.bioclipse.moss.business/.classpath : Export the jars too - http://bit.ly/e4rjvz
21:17 CIA-91 bioclipse.moss: Egon Willighagen master * r43b7f38 / features/net.bioclipse.moss_site/feature.xml : The MOSS features depends on cheminformatics - http://bit.ly/f6ZzOJ
21:28 CIA-91 bioclipse.moss: Egon Willighagen master * r4c76175 / (2 files in 2 dirs): MOSS depends on RDF too - http://bit.ly/g1lR6m
21:28 CIA-91 bioclipse.moss: Egon Willighagen master * rb9b4736 / plugins/net.bioclipse.moss.b​usiness/META-INF/MANIFEST.MF : Removed versioning on org.eclipse.ui.views - http://bit.ly/gLeHgS
21:39 CIA-91 bioclipse.moss: Egon Willighagen master * r97c2f6a / features/net.bioclipse.moss_feature/moss.product : Removed bad product file - http://bit.ly/dPPkfH
21:39 CIA-91 bioclipse.moss: Egon Willighagen master * r9ff7a91 / (2 files in 2 dirs): Updated versioning - http://bit.ly/eFXLZq
21:46 CIA-91 bioclipse.chembl: Egon Willighagen master * r66b07bb / (2 files in 2 dirs): Removed bad product files - http://bit.ly/dOnD7f
21:46 CIA-91 bioclipse.chembl: Egon Willighagen master * r91a50be / plugins/net.bioclipse.chembl.moss.ui/.classpath : Export te jars too - http://bit.ly/g58iBl
21:46 CIA-91 bioclipse.chembl: Egon Willighagen master * r5fa1bb6 / features/net.bioclipse.chembl_site/feature.xml : Defined the missing dependencies - http://bit.ly/gTEBVk
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