Camelia, the Perl 6 bug

IRC log for #bioclipse, 2011-03-01

| Channels | #bioclipse index | Today | | Search | Google Search | Plain-Text | summary

All times shown according to UTC.

Time Nick Message
02:42 CIA-4 bioclipse.cheminformatics: Egon Willighagen master * r440a107 / (4 files in 4 dirs): Added R,S rendering - http://bit.ly/g2ZNWa
02:42 CIA-4 bioclipse.cheminformatics: Egon Willighagen master * r4923f88 / plugins/net.bioclipse.cdk.jchempaint/src/net/bioc​lipse/cdk/jchempaint/generators/RSGenerator.java : Color me orange - http://bit.ly/gfnHuN
02:42 CIA-4 bioclipse.cheminformatics: Egon Willighagen master * rfbcf51c / plugins/net.bioclipse.cdk.business/src/ne​t/bioclipse/cdk/business/CDKManager.java : Copy coordinates, fixing loss of a lot of information, including stereochemistry - http://bit.ly/eurEXo
03:08 Juul joined #bioclipse
04:50 sneumann_ joined #bioclipse
05:00 sneumann_ left #bioclipse
06:23 sneumann_ joined #bioclipse
06:43 Juul left #bioclipse
07:53 Gpox joined #bioclipse
09:03 sneumann__ joined #bioclipse
09:03 sneumann_ left #bioclipse
09:09 jonalv joined #bioclipse
09:27 egonw joined #bioclipse
10:00 cande joined #bioclipse
10:17 sneumann__ left #bioclipse
10:17 sneumann joined #bioclipse
10:22 CIA-4 bioclipse.core: jonalv HEADLESS * re3d2c9a / plugins/net.bioclipse.scripting.ui/src/net/biocli​pse/scripting/ui/business/IJsConsoleManager.java : IJavaScriptConsolePrinterChannel moved to api bund (+23 more commits...) - http://bit.ly/eYfBEf
10:28 egonw bioclipse website is still down?
10:28 egonw the wiki is, at least :(
10:44 egonw Gpox: ping
10:44 egonw Gpox: I added a new generator
10:44 egonw for R,S stereochemistry
10:44 egonw only for the JCPCellViewer at this moment
10:44 egonw but for that, I also had to refactor the cdk.generate2d()
10:44 egonw the latter now no longer 'clones' the ICDKMolecule...
10:44 egonw well, you do get a new ICDKMOlecule, but the original IAtomContainer
10:45 egonw rather than a new IAtomContainer
10:45 jonalv hm, I was using Gpox++...
10:45 egonw so that stereoinfo is no longer lost
10:45 jonalv :)
10:45 egonw Gpox: but be aware there may be unexpected side effects...
10:46 * egonw in 5 minutes I have to relocate to the EU meeting...
10:48 egonw jonalv: can you make sure Gpox reads my messages at some point
10:48 egonw he does not have to do anything
10:48 egonw but just like to know he read them :)
10:48 Gpox ok
10:48 egonw Gpox: thanx :)
10:59 egonw left #bioclipse
11:10 egonw joined #bioclipse
11:16 cande left #bioclipse
12:15 samuell joined #bioclipse
12:26 zorino joined #bioclipse
12:28 zorino is normal that i get "This site has been suspended." on www.bioclipse.net ?
12:42 egonw no, not normal
12:42 egonw it is being looked into
12:43 zorino ok thx
12:45 cande joined #bioclipse
12:47 egonw left #bioclipse
12:50 olass joined #bioclipse
14:03 jonalv what is the opsin manager?
14:05 egonw joined #bioclipse
14:15 CIA-4 bioclipse.cheminformatics: jonalv HEADLESS * ra0e4b77 / (5 files in 3 dirs): adapted net.bc.opsin for HEADLESS branch (+11 more commits...) - http://bit.ly/gQ21l9
14:36 jonalv egonw: I found a new manager, opsin, is that yours? :)
14:36 egonw yes
14:36 egonw I saw you commit
14:36 egonw well, the CIA message
14:36 jonalv I hve ported it on the headless branch now
14:36 egonw not the commit it self
14:36 egonw indeed
14:36 jonalv I can't get hudson so to build htings though
14:36 egonw I'll take notice of what I did wrong :)
14:36 jonalv I think it is a hudson config thing though
14:37 jonalv egonw: you didn't do anything wrong, things have changed place in the headless branch
14:37 egonw oh, the manager was fine, just fixing the new packages of the interfaces?
14:37 egonw yeah, ack
14:37 egonw good :)
14:38 jonalv we are going to have a lot of string substition all over the place before we can merge all
14:38 egonw ack
14:38 jonalv olass, stole Gpox so I don't quite know how to go on with hudson...
14:39 egonw ack...
14:39 egonw I'm in the middle of meetings, so can't really help right now either
14:40 jonalv I see...
15:02 egonw jonalv: http://www.springerlink.com.ezproxy.​its.uu.se/content/978-1-60761-838-6/
15:02 egonw see chapter 6 and 7 or so
15:02 egonw on fingerprints
15:08 sneumann left #bioclipse
15:33 sneumann joined #bioclipse
15:55 samuell left #bioclipse
16:08 sneumann left #bioclipse
16:13 cande left #bioclipse
17:03 Gpox left #bioclipse
17:04 Gpox joined #bioclipse
17:09 Gpox left #bioclipse
17:48 olass left #bioclipse
17:51 jonalv left #bioclipse
18:20 sneumann joined #bioclipse
18:43 egonw left #bioclipse
18:48 egonw joined #bioclipse
19:12 egonw left #bioclipse
19:37 zorino left #bioclipse
21:57 jonalv joined #bioclipse
22:09 sneumann left #bioclipse
22:22 olass joined #bioclipse
22:24 olass_ joined #bioclipse
22:27 olass left #bioclipse
22:27 olass_ is now known as olass
22:34 jonalv left #bioclipse
23:04 egonw joined #bioclipse
23:10 olass left #bioclipse

| Channels | #bioclipse index | Today | | Search | Google Search | Plain-Text | summary