Camelia, the Perl 6 bug

IRC log for #bioclipse, 2011-03-08

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All times shown according to UTC.

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12:35 Topic for #bioclipse is now #bioclipse An open source workbench for chem- and bioinformatics - http://www.bioclipse.net/ | BioclipseWiki => http://wiki.bioclipse.net/ !! | logs => http://colabti.org/irclogge​r/irclogger_logs/bioclipse & http://moritz.faui2k3.org/irc​log/out.pl?channel=bioclipse
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13:47 egonw argh... I hate #eclipse
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14:08 edrin hi
14:17 egonw hi edrin
14:30 CIA-52 bioclipse.medea: Egon Willighagen master * r9d418da / (3 files in 3 dirs): Use imports instead of bundles, solving some dependency problems in Bioclipse 2.4 - http://bit.ly/ff1sDQ
14:30 CIA-52 bioclipse.medea: Egon Willighagen master * ra7447e4 / plugins/net.bioclipse.medea/META-INF/MANIFEST.MF : Removed an incorrect import - http://bit.ly/efsT06
15:00 egonw argghhhh!!!!!'
15:04 egonw Gpox: what's the URL for the aggregating update site?
15:05 Gpox http://pele.farmbio.uu.se/buckmin​ster-web/p2/LastSuccessfulBuild/
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15:14 egonw eclipse--
15:14 egonw eclipse--
15:14 egonw eclipse--
15:16 CIA-52 bioclipse.core: Egon Willighagen master * r7dfc86f / net.bioclipse.target.platf​orm/target-platform.target : Removed Guava as it is the wrong version - http://bit.ly/gAlWKa
15:19 CIA-52 bioclipse.ons: Egon Willighagen master * raf6707f / plugins/net.bioclipse.google/META-INF/MANIFEST.MF : The dot comes first - http://bit.ly/dUtuFa
15:19 CIA-52 bioclipse.ons: Egon Willighagen master * r6a311f9 / plugins/net.bioclipse.google/.classpath : Export the jars - http://bit.ly/dUkMRY
15:19 CIA-52 bioclipse.ons: Egon Willighagen master * r80584fb / features/net.bioclipse.google_feature/feature.xml : No Guava: wrong version for my needs - http://bit.ly/eIgJ8r
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16:03 egonw damn'
16:03 egonw that took me long to find the problem
16:03 egonw jonalv: you know what is was?
16:03 jonalv egonw: no, why would I?
16:04 egonw dunno..
16:04 egonw maybe you already fixed it in HEADLESS :)
16:05 egonw it's in this commit
16:05 egonw commit 334c7e6d8da7828016042c8520629b7ccc4fc24f
16:05 egonw do you spot the problem
16:05 egonw took me more than an hour :(
16:05 egonw bioclipse.ons repos
16:06 jonalv egonw: give me a link and I will give you a minute of my time even though Jarl is probaly waiting for me...
16:07 egonw not important
16:07 egonw a dot sneaked in
16:07 egonw in the MANIFEST
16:07 egonw foo.jar.
16:07 egonw at the end
16:07 jonalv oh
16:07 egonw hard to notice :(
16:07 jonalv yea
16:08 CIA-52 bioclipse.ons: Egon Willighagen master * rf6af11b / plugins/net.bioclipse.google/META-INF/MANIFEST.MF : Removed stupid dot; how descructive it can be; how annoyingly bad it is to not give decent problem reports - http://bit.ly/gyv2lO
16:08 CIA-52 bioclipse.ons: Egon Willighagen master * ra5d40a8 / plugins/net.bioclipse.google/build.properties : Removed duplicate source line - http://bit.ly/eXHMjz
16:14 CIA-52 bioclipse.cheminformatics: Egon Willighagen master * r252f05d / features/net.bioclipse.chemoin​formatics_feature/feature.xml : Depend on net.sf.jni-inchi until a new proper osgi bundle for 0.7.0 is available - http://bit.ly/gBm08H
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16:51 CIA-52 bioclipse.core: Egon Willighagen master * r31353ea / plugins/net.bioclipse.core/src/net/bioclipse/manag​ers/business/AbstractManagerMethodDispatcher.java : Proper error reporting if he invocation error is not a BioclipseException or a OperationCanceledException - http://bit.ly/hxM8sO
16:51 egonw__ that patch
16:51 egonw__ I had the wrong channel :)
16:52 jonalv ah I see
16:52 egonw__ is now known as egonw
16:52 jonalv egonw: I will look at it on github if that is ok with you?
16:52 egonw if not mistaken there were two problems:
16:52 egonw sure
16:53 jonalv okey, what were those?
16:53 egonw 1. is was recursing, but still reporting for e, instead of t
16:53 egonw 2. it had a one-off bug, causing it to report on the null
16:53 egonw being the cause of the last not null cause
16:54 egonw ie. it was doing one t = t.getCause() too much
16:54 jonalv oh this is the code that digs up BioclipseExeption from the stack trace?
16:54 egonw yes
16:54 egonw it still doe
16:54 egonw s
16:54 egonw but now also properly reports if it is not :)
16:54 egonw ok, going offline
16:55 jonalv egonw: no wait
16:56 jonalv why are you reporting the message of the cause excpetion instead of the actual caught message?
16:57 jonalv oh, ah you have caught an InvocationTargetException so it is in fact always the casue we are intrested in
16:57 jonalv or, uhm
16:57 * jonalv might have confused himself now....
16:59 jonalv okey I got it now, looks good, egonw++
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18:45 CIA-52 bioclipse.core: Egon Willighagen master * r4a78da7 / net.bioclipse.target.platf​orm/target-platform.target : Added Guava for the collections. - http://bit.ly/fGwKnx
18:46 CIA-52 bioclipse.ons: Egon Willighagen master * r7b7fbbe / features/net.bioclipse.google_feature/feature.xml : Guava for google collections. - http://bit.ly/dYi1oI
18:46 CIA-52 bioclipse.ons: Egon Willighagen master * re388c46 / plugins/net.bioclipse.google/src/net/bioclip​se/google/business/GoogleManagerFactory.java : Renamed manager and throw an error when it does not instantiate - http://bit.ly/fxsc1z
18:46 CIA-52 bioclipse.ons: Egon Willighagen master * r767c58b / plugins/net.bioclipse.google/META-INF/MANIFEST.MF : Do depend on guava for the google collections - http://bit.ly/fLW3Wt
19:01 CIA-52 bioclipse.ons: Egon Willighagen master * r5d44c48 / plugins/net.bioclipse.google/src/net/bioc​lipse/google/business/GoogleManager.java : Actually use the passed parameters, instead of always the solubilities from ONS :) - http://bit.ly/gcuOtA
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