Camelia, the Perl 6 bug

IRC log for #bioclipse, 2011-03-18

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All times shown according to UTC.

Time Nick Message
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14:01 jonalv @ping
14:01 zarah jonalv: pong
14:02 jonalv hm very quite here today
14:02 jonalv |quiet
14:32 olass it's friday
14:32 olass people are tired I guess..
14:32 * olass is
14:36 jonalv is now known as GrisenMedTrynet
14:39 GrisenMedTrynet is now known as jonalv
14:51 CIA-52 org.openscience.cdk: Egon Willighagen bioclipse2.6 * r87d24b6 / (89 files in 23 dirs): Added SMSD - http://bit.ly/hIGeWq
14:51 egonw olass: try now
14:52 olass ok..
14:53 olass egonw: thanks
14:54 olass hmm, it is red...
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14:54 olass org.os.cdl.inchi is also red...
14:54 olass egonw: no red crosses for you?
14:55 olass The method getInchiKey(String) is undefined for the type JniInchiWrapper
14:55 olass The type signature.AbstractGraphSignature cannot be resolved. It is indirectly referenced from required .class files
14:55 olass egonw: do you know?
14:56 egonw oh, crap...
14:56 egonw arg...
14:57 egonw that should have just worked, but I'm looking into it now
15:05 olass thx
15:17 egonw grpmh...
15:17 egonw Fri afternoon :/
15:17 egonw took me longer... patch commited now:
15:17 egonw (well, happy to see that it's Fri for the CIA too)
15:19 CIA-52 org.openscience.cdk: Egon Willighagen bioclipse2.6 * r8e8a19c / plugins/org.openscience.cdk​.smsd/META-INF/MANIFEST.MF : Added a missing dependency on the signatures bundle - http://bit.ly/fHk7Bs
15:20 egonw olass: please try again
15:20 olass ok
15:20 olass thanks, that solves the SMSD problem
15:21 olass but the inchi is still there..
15:21 olass nChIGenerator.java: The method getInchiKey(String) is undefined for the type JniInchiWrapperI
15:21 olass what can that be?
15:21 olass egonw: any idea?
15:21 egonw oh, rioght...
15:21 egonw umm... no, don't have that here
15:22 olass hmm..
15:22 egonw make sure you have the net.sf.jniinchi in your workspace
15:22 egonw ok, let's talk in 25 mins
15:22 egonw will relocate to my other desk now
15:22 egonw brb
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15:32 olass @tell egonw yes, I have net.sf.jniinchi available
15:32 zarah Consider it noted.
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15:58 egonw olass: wanna chat about inchi/smsd?
15:58 zarah egonw: You have new messages. Write '/msg zarah @messages' to read them.
16:00 olass smsd seems to work fine
16:00 olass what's the story with inchi?
16:00 egonw ah... what did it? kick eclipse?
16:00 egonw dunno... you had trouble with it? it not finding it, or so?
16:00 egonw is that solved now then?
16:00 olass no
16:00 olass inchi still fails
16:00 olass red cross
16:00 egonw ok... cdk.inchi?
16:00 egonw what class/line?
16:01 olass The method getInchiKey(String) is undefined for the type JniInchiWrapperInChIGenerator.java/org.openscie​nce.cdk.inchi/src/org/openscience/cdk/inchiline 403Java Problem
16:01 egonw ok...
16:01 egonw eclipse is till preparing, but will look at that
16:01 olass apart from this, I can compile bioclipse2.6 branch now
16:01 olass looks good
16:04 * egonw doesn't seem to have any JniInchiWrapperInChIGenerator class...
16:04 egonw olass: can you please double check that you have the file in the repos, rather stale on your disk?
16:04 * egonw is checking githun
16:05 olass what file?
16:05 egonw and github too
16:05 egonw JniInchiWrapperInChIGenerator.java
16:05 egonw where you got the error
16:05 egonw or is that line 403 not in that file?
16:05 olass ok...
16:06 olass it refers to the jar net.bioclipse.jniinchi.jar
16:06 egonw define 'it'
16:07 egonw nothing should refer to that jar
16:07 egonw and that jar should not be part of your target platform
16:07 olass hmm...
16:07 egonw (unless I missed Gpox's update of that jar to the latest official 0.7.0 of JNI-InChI
16:07 olass I am not in bioclipse workspace now... is that the only TP working for this then?
16:08 * egonw is so happy with all the new snow... we might even have a white x-mas!
16:08 olass ok, so that might be theproblem then...
16:08 egonw "is that the only TP working for this then?" .... must be the snow... not sure what you refer to here with that
16:10 olass ok
16:11 egonw ... with "that"
16:11 egonw I only know of one target platform
16:12 egonw olass: are yuo running buckminster from the cmd line?
16:13 olass buckminster?
16:14 * olass runs java in eclipse
16:15 * olass has many workspaces
16:16 * egonw runs eclipse with java
16:16 egonw sorry, you completely lost me :)
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16:19 olass who said something about buckminster?
16:19 olass not me...
16:19 * olass is lost too
16:19 egonw_ I did
16:19 egonw_ no, you said you were not using the bioclipse workspace
16:19 egonw_ so, I was wondering how you build buiclipse then
16:19 egonw_ still am
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16:22 egonw olass: anyways... is removing net.bioclipse.jniinchi from the TP helping?
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16:43 egonw_ damn
16:44 egonw_ I never knew the pirates were responsible for global warming...
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