Camelia, the Perl 6 bug

IRC log for #bioclipse, 2011-05-13

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All times shown according to UTC.

Time Nick Message
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09:27 jonalv oh my god
09:27 jonalv who do I blame?
09:28 jonalv who wrote the Extract entries from SDF dialog?
09:28 jonalv :)
09:28 jonalv it's using the ui thread for doign the work
10:25 egonw feel free to rewrite and fix it...
10:25 egonw [05/13/11 11:27] <jonalv> who do I blame?
10:25 egonw use: git annotate
10:26 egonw steinbeck: the JChemInf thematic series on RDF will go online today! :)
10:26 egonw with the first papers
10:26 steinbeck Delighted to hear that :)
10:27 * egonw heard rumors that the PMR thematic series will be huge
10:27 egonw say, a full issue more or less :) (of all get accepted)
10:28 * egonw also notes that he hate adverse drug reactions...
10:28 egonw particularly if a subsequent paracetamol does not help a bit :(
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11:27 jonalv Gpox: ping
11:27 Gpox jonalv: pong
11:27 jonalv Gpox: do you have a minute?
11:27 Gpox sure
11:28 jonalv Gpox: row 2233 of CDKManager.java
11:28 jonalv there is something fishy going on there I think
11:28 jonalv but I am not sure
11:29 jonalv why is that not run as a job? Why do we need that method?
11:29 jonalv extracting things from SDF files must be long running things, eh?
11:38 * jonalv guesses that was about one minute now, eh Gpox ?
11:43 Gpox jonalv: yes it should be a long running job, dunno if it is needed. I think it was before the new sdf editor was working.
11:43 Gpox jonalv: look at commit 96be00daf7037b507a2010f5327f9c82642f01ee
11:44 jonalv hm how do you find a commit like that?
11:46 jonalv hm whatever, it seems a bit messy that whole thing though
11:46 Gpox gitx and search for SHA, or git log 96be00daf7037b507a2010f5327f9c82642f01ee
11:47 jonalv Maybe I should file a bug for bug fixing sprint?
11:48 * jonalv is testrunning structureDB
11:48 jonalv it handles 10000 mols from chembl without problem at least
11:49 jonalv http://www.biomedcentral.com/1471-2105/12/151 What freaking form of naming scheme are some people using?
11:55 jonalv @pz 3039
11:55 zarah http://pele.farmbio.uu.se/bug​zilla36/show_bug.cgi?id=3039
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12:33 jonalv gah I am missing a 2 day work with 2 hours, the cluster is gonan kill my job 2 hours early. I FAIL yet again...
13:24 olass jonalv: you can email support@uppmax, and they can extend the job with a few hours...
13:24 olass if you ask politely :)
13:24 jonalv olass: too late :)
13:25 jonalv olass: but good to know :)
13:25 olass yes, but try not to... better set wall time larger
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13:26 jonalv olass: of course
13:26 jonalv I thought I had set it to 3 days but it was at 2 days and I needced 2 days and two hours
13:26 jonalv lol
13:26 jonalv but I have restarted it with 3 days now
13:26 jonalv it will be done come monday :)
13:26 jonalv if it get's started soonish
13:27 jonalv it's a learning process... :)
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