Camelia, the Perl 6 bug

IRC log for #bioclipse, 2011-07-01

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All times shown according to UTC.

Time Nick Message
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11:37 zaetnick REGISTER 89c9cc valyo@kth.se
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12:18 egonw ouch
12:21 zaetnick hi, I have a question about the R console integration
12:21 egonw zaetnick: you changed your pwd, right?
12:21 egonw and just ask the question
12:23 zaetnick on my mac I cannot install the rj package with the "R -e "install.packages('rj',..." command
12:24 egonw what error do you get?
12:24 zaetnick In getDependencies(pkgs, dependencies, available, lib) :
12:24 zaetnick package �rj� is not available (for R version 2.13.0)
12:24 zaetnick In getDependencies(pkgs, dependencies, available, lib) :
12:25 egonw but you downloaded it, right?
12:26 zaetnick if I download the package from http://www.walware.de/ I can install it with R CMD INSTALL...
12:27 egonw that should be fine
12:28 egonw not?
12:28 zaetnick yes and no
12:28 zaetnick because the aim is to make bioclipse-R install rj if it's not found
12:29 egonw ah, ic
12:31 zaetnick so I was wondering if the problem is related to my platform, or "install.packages("rj", repos="http://download.walware.de/rj-0.5")" does not work in general
12:31 egonw how does it not work for you?
12:31 egonw it works here just now
12:32 egonw it downloaded the package, and started compiling
12:32 egonw when does it go wrong on your machine?
12:32 zaetnick ok, so the problem is with my machine
12:33 zaetnick I get the above error message if I run it in terminal
12:34 egonw please copy paste the full output to gist.github.com
12:35 zaetnick and when I launch bioclipse from eclipse in the console I just get "Error: Installation of rj failed."
12:38 egonw no surprise
12:39 zaetnick https://gist.github.com/1058455
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12:53 zaetnick but since the command worked for you, I can assume it's related to my machine
13:48 egonw back
13:48 egonw yeah, that output does not leave much to think about...
13:48 egonw dunno what is happening there
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