Camelia, the Perl 6 bug

IRC log for #bioclipse, 2011-08-06

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All times shown according to UTC.

Time Nick Message
05:57 sneumann joined #bioclipse
06:31 egonw joined #bioclipse
07:54 jonalv joined #bioclipse
09:06 olass joined #bioclipse
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09:42 CIA-120 bioclipse.core: Egon Willighagen 2.5.x * r1b85150 / (11 files in 6 dirs): Patch to create a Groovy console, but printing still fails - http://bit.ly/oH6kJm
10:08 jonalv joined #bioclipse
17:20 CIA-120 bioclipse.core: Egon Willighagen 2.5.x * rf5cfb23 / (3 files in 2 dirs): Overwrite STDOUT of the scripting context to allow Groovy's print output to be routed to the GroovyConsoleView → print "it works :)" - http://bit.ly/ph9JTY
17:55 sneumann joined #bioclipse
18:09 egonw hi sneumann
18:10 egonw sneumann: I ran into this workflow yesterday → http://www.myexperiment.org/workflows/1039.html
18:11 egonw I did not really remember that you got so far with metabolomics on the manager level...
18:11 egonw I guess it is time for me to get that stuff autobuilded on hudson
18:12 egonw though I am wondering what the state is of Speclipse
18:37 sneumann hi egonw
18:37 sneumann (greetings from Strand / Baltic sea :-)
18:37 egonw oh, nice :)
18:37 egonw good weather?
18:38 sneumann the code is on github,
18:38 sneumann (network connection is lousy, 7kb/s)
18:38 egonw no worries
18:38 sneumann IIRC speclipse is probably dead,
18:38 sneumann ask christoph
18:38 egonw yeah, tempt to think so too
18:39 egonw he has no one working on it right now
18:39 egonw but that might not mean the code does not still compile
18:39 egonw that speclipse manager command is still cool
18:39 egonw and an 'editor' to view spectra is pretty isolated
18:39 sneumann was one of the last things stephan did
18:40 sneumann is your connection faster than mine, can you find the metfrag stuff on https://github.com/sneumann/ ?
18:40 egonw oh, what is bioclipse.clustering ?
18:40 egonw cluster molecules?
18:41 egonw nice last commit "added some List<IMolecule> stuff without success " :)
18:41 sneumann Hm, I think the problem was that I could "run" MetFrag,
18:41 sneumann but failled to collect the results into BC
18:42 egonw ok
18:42 egonw getting it part of the autobuild service would be good
18:42 egonw because people can then install it, and see what it currently gives
18:43 sneumann Yes, especially since we do have a work package in our MetFrag2 project to deliver
18:43 sneumann a BC based MetFrag ;-)
18:43 egonw funded?
18:43 sneumann yup
18:43 egonw ok!
18:44 egonw maybe I knew this already, but I keep running into things every day know from the past year, that I completely missed...
18:44 egonw bad year behind me...
18:44 sneumann we'd better get that done before xmas, since Sebastian is about to finish his PhD,
18:44 egonw feels like waking up from a long sleep
18:44 sneumann and Franziska would have quite a learning curve into BC phacking
19:11 sneumann joined #bioclipse
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20:20 sneumann zarah: tell egonw http://lwn.net/Articles/452577/bigpage has some nice paragraphs on RDF and frontends (scroll down to IKS: Toward smarter content management systems)
20:20 zarah Consider it noted.
20:39 Juul joined #bioclipse
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