Camelia, the Perl 6 bug

IRC log for #bioclipse, 2011-08-23

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All times shown according to UTC.

Time Nick Message
05:24 sneumann joined #bioclipse
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08:12 egonw moin moin
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08:32 egonw jonalv: ping
08:32 egonw > hits
08:32 egonw List<Integer> of size 15
08:32 jonalv egonw: pong
08:32 zarah jonalv: You have new messages. Write '/msg zarah @messages' to read them.
08:32 egonw didn't List<Foo> in the past end up as text in the JS console?
08:32 jonalv zarah: massage
08:32 zarah jonalv: 21 m 8 s ago, egonw_ said http://lanyrd.com/2012/jfokus/ → maybe BSL should got JVM native :)
08:33 egonw in this case, something like:
08:33 egonw [1, 676, 34, 4, 3]
08:33 jonalv egonw: yea sounds very familiar
08:34 egonw ok, so perhaps another regression then
08:35 jonalv egonw: what do you mean JVM native?
08:35 jonalv egonw: oh hang on, that is a JavaScript list
08:35 egonw as JSR 22foo implementation :)
08:35 jonalv egonw: not sure that has ever worked
08:35 egonw a JS list?
08:36 egonw it's returned by a manager
08:36 jonalv JSR 22f00?
08:36 egonw hahahaha
08:36 egonw well, never mind...
08:36 egonw anyway... sounds like an interesting meeting
08:36 egonw maybe they have a section on applications...
08:36 jonalv oh if it is a java.util.List it should work, I agree with that
08:37 egonw then BSL would fit in
08:37 jonalv okey
08:37 egonw extending any language running on a JVM with domain functionality
08:37 egonw migth give valuable feedback
08:38 jonalv hm
08:39 jonalv feels like it would be difficult to keep to the topic of jvm languages
08:39 egonw yeah, could be too far outside scope
08:39 egonw but you are running on a JVM
08:40 jonalv yea but still
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08:41 jonalv I don't know
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11:11 CIA-120 bioclipse.rdf: Egon Willighagen 2.5.x * r724bdf1 / plugins/net.bioclipse.rdf/src/net/bi​oclipse/rdf/business/RDFManager.java : Close the stream afterwards - http://git.io/-L-5JQ
11:30 CIA-120 bioclipse.opentox: Egon Willighagen master * r05c851c / (2 files in 2 dirs): Added some resource management - http://git.io/dRKv2A
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11:56 samuell What should I think about some bioclipse plugins that seems to be required by my plugin (although I don't know why), which depends on the bioclipse core feature, but which are not bundled in the core feature itself?
11:56 samuell ... for example net.bioclipse.jama
11:56 samuell (Have added them with the "Add required plugins" in the run configurations menu, before, but trying to resolve these "for real" now ....)
11:57 samuell So for example net.bioclipse.jama ... is it just me who are doing something wrong when I'm becoming dependent on it, or could it be a bug that it is not included in the core feature?
11:58 samuell Any ideas, Gpox, jonalv ?
11:58 CIA-120 bioclipse.opentox: Egon Willighagen master * r29f0a4b / plugins/net.bioclipse.opentox/src/net/bi​oclipse/opentox/api/ModelAlgorithm.java : Tuned the waiting: added some randomness, and wait a bit longer each time, with 20 secs and a bit as maximum. Also minitor task redirects. - http://git.io/5Z-EYQ
12:01 CIA-120 bioclipse.opentox: Egon Willighagen master * r5a0d98c / plugins/net.bioclipse.opentox/src/net/bioclipse​/opentox/api/MolecularDescriptorAlgorithm.java : Tuned the waiting: added some randomness, and wait a bit longer each time, with 20 secs and a bit as maximum. - http://git.io/mIfv-A
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12:05 egonw depend on bioclipse.statistics too
12:06 samuell egonw, Ok, will try!
12:06 samuell So, are there more features that one will want to depend on?
12:07 samuell ... I know one is asked to check out a few plugins/features apart from core, on the wiki "checking out bioclipse" page ...
12:07 samuell ... do I basically need to depend on all of these?
12:07 egonw no
12:07 egonw not sure why you depend on Jama actaully
12:07 samuell Ok ...
12:12 jonalv samuell: dificult to say something general I think. You depend on the features you need....
12:12 jonalv or have I missed something?
12:28 samuell jonalv, I don't know ... I'm just surprised to realize that I'm depending on stuff that I'm not (knowingly) using ...
12:30 jonalv samuell: well, what are you using that is creating the dependecny then?
12:30 samuell jonalv, Good question :)
12:30 jonalv maybe try to figure that out?
12:31 samuell Yes, that's what I'm doing by asking here, among other things :)
12:31 samuell But I guess you're right that it is probably something weird with my project setup or something ...
12:32 samuell (which is what I understood that you hinted about, at least :) )
12:32 samuell egonw, Depending on statistics feature doesn't help, actually :/
12:33 samuell ... or wait, maybe it did ...
12:33 * samuell is checking closer
12:37 samuell egonw, Yes, it seems to work! Never mind ... (and thanks!)
12:38 samuell egonw++
13:15 CIA-120 bioclipse.opentox: Egon Willighagen master * r2128a3d / plugins/net.bioclipse.opentox/src/net/bioclipse​/opentox/api/MolecularDescriptorAlgorithm.java : Report waiting time - http://git.io/pligVw
13:15 CIA-120 bioclipse.opentox: Egon Willighagen master * rda208ce / (5 files in 3 dirs): Introduce the Eclipse IProgressMonitor into the OpenTox API client code, so that calls can be canceled - http://git.io/r7BG9A
13:19 CIA-120 bioclipse.opentox: Egon Willighagen master * rdb2b967 / plugins/net.bioclipse.opentox.ds/src/net​/bioclipse/opentox/ds/OpenToxModel.java : And stop spawning attempts when the process is cancelled - http://git.io/-x6vkw
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14:54 CIA-120 bioclipse: Samuel Lampa master * r8d311c8 / (3 files): Starting to add required plugins properly as dependencies. Got ssh connection working now. Misc stuff still missing - http://git.io/X_4K1w
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15:06 CIA-120 bioclipse: Samuel Lampa master * r8a1334a / features/net.bioclipse.hpc_feature/feature.xml : Added rest of required plug-ins - http://git.io/BMVKWw
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