IRC log for #bioclipse, 2012-02-16

All times shown according to UTC.

Time	Nick	Message
06:18		olass joined #bioclipse
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07:40	CIA-98	bioclipse.balloon: Arvid Berg 2.5.x * r3927032 / (3 files in 3 dirs):
07:40	CIA-98	bioclipse.balloon: Removed qualifier and added platform filter
07:40	CIA-98	bioclipse.balloon: Because of a possible bug in buckminster related
07:40	CIA-98	bioclipse.balloon: to qualifier on fragments - http://git.io/2ew53g
07:40	CIA-98	bioclipse.balloon: Arvid Berg 2.5.x * r920dee9 / features/net.bioclipse.balloon_feature/feature.xml : Updated supported envrionment and required dependencies - http://git.io/GBtziQ
07:43	CIA-98	bioclipse.core: Arvid Berg 2.5.x * r1bfab5e / features/net.bioclipse.core.tests_feature/AllCoreRepoPluginTestsSuit.launch : Modified test launcher to use features - http://git.io/1dtGag
07:58	CIA-98	bioclipse.core: Arvid Berg 2.5.x * ra45ce1e / features/net.bioclipse.core.tests_feature/feature.xml : Added platform feature to resolve core stuff in test run - http://git.io/HBTisg
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08:41	CIA-98	bioclipse.bridgedb: Egon Willighagen master * r56245bc / (2 files): Allow mapping with local databases too - http://git.io/qFASig
08:41	CIA-98	bioclipse.bridgedb: Egon Willighagen master * ra904095 / (2 files): Allow the creation of Xref objects from search output - http://git.io/11vqIg
08:41		egonw joined #bioclipse
08:48	CIA-98	bioclipse.core: Arvid Berg 2.5.x * r0fff8d8 / plugins/net.bioclipse.logback/src/logback.xml : Changed from layout to encoder in log back config file - http://git.io/JtmRpg
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11:01	jonalv	Gpox: c12c3c4c5c1c1c6c7c2c2c8c3c3c9c4c4c%10c5c5c1c1c6c6c%11c7c2c2c7c8c3c3c8c9c4c4c9c%10c5c5c1c1c6c6c%11c2c2c7c3c3c8c4c4c9c5c1c1c6c2c3c41
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12:36	egonw	nice SMILES
12:37	CIA-98	bioclipse.cheminformatics: Arvid Berg 2.5.x * r831e683 / plugins/net.bioclipse.cdk.ui/src/net/bioclipse/cdk/ui/wizards/NewFromSMILESWizard.java :
12:37	CIA-98	bioclipse.cheminformatics: Added progress monitor and handle fixAromaticBondORder timeout.
12:37	CIA-98	bioclipse.cheminformatics: fix for bug 3067 - http://git.io/akoBQA
12:37	CIA-98	bioclipse.cheminformatics: Arvid Berg 2.5.x * rb4aeb86 / plugins/net.bioclipse.cdk.jchempaint/src/net/bioclipse/cdk/jchempaint/editor/JChemPaintEditor.java :
12:37	CIA-98	bioclipse.cheminformatics: Force virtual to become visible when savingAs for molecule
12:37	CIA-98	bioclipse.cheminformatics: Solves bug 3016 - http://git.io/EfNNiQ
12:37	zarah	bug #3067 \| http://tinyurl.com/7q3223h
12:37	zarah	bug #3016 \| http://tinyurl.com/6vw8ors
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13:34	CIA-98	bioclipse.core: Arvid Berg 2.5.x * r603bf0b / (2 files):
13:34	CIA-98	bioclipse.core: Moved ContentTypesPluginTest to net.bioclipse.cml.tests
13:34	CIA-98	bioclipse.core: That is where the cml contentypes is declared. - http://git.io/N4_y5Q
13:34	CIA-98	bioclipse.core: Arvid Berg 2.5.x * rc65e0dd / plugins/net.bioclipse.scripting.tests/src/net/bioclipse/scripting/ScriptingTestCase.java : Fixed javascript test - http://git.io/cGW9GA
13:47	CIA-98	bioclipse.cheminformatics: Arvid Berg 2.5.x * r784f3f7 / features/net.bioclipse.chemoinformatics_feature/feature.xml : Added cmlxom to required deps - http://git.io/k84ojw
13:47	CIA-98	bioclipse.cheminformatics: Arvid Berg 2.5.x * re52b907 / plugins/net.bioclipse.cdk.ui/src/net/bioclipse/cdk/ui/wizards/NewFromSMILESWizard.java : Removed unused import added my mistake - http://git.io/D7Ci7w
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14:01	CIA-98	bioclipse.core: Arvid Berg 2.5.x * r9d74a44 / plugins/net.bioclipse.scripting.tests/src/net/bioclipse/scripting/ScriptingTestCase.java :
14:01	CIA-98	bioclipse.core: Fixed test case to work both locally and on pele
14:01	CIA-98	bioclipse.core: This is because the javascript implementations differs
14:01	CIA-98	bioclipse.core: between the machines - http://git.io/r_wVrQ
14:02	egonw	that sounds scary
14:02	egonw	I think we shiped Rhino with Bioclipse?
14:06	jonalv	egonw: no seems different JVMs have different JavaScript
14:06	egonw	ok, that answer does not make sense
14:06	egonw	[02/16/12 15:02] <egonw> I think we shiped Rhino with Bioclipse?
14:06	egonw	yes or no?
14:06	jonalv	egonw: on Ubuntu it's open java or something?
14:06	jonalv	egonw: no
14:07	egonw	ah, ok, yes, that is asking for problems
14:07	jonalv	aren't we using the one shipped with the JVM, remember java scripting support and stuff?
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14:07	jonalv	egonw: that is why it was so easy to add that other scripting console you were working on, no?
14:08	egonw	good point
14:08	egonw	yeah, that could have been the time we dropped our custom rhino
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