Camelia, the Perl 6 bug

IRC log for #bioclipse, 2012-02-29

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All times shown according to UTC.

Time Nick Message
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09:47 konditorn jonalv: What features do I need to install to be able to instal QSAR?
09:47 jonalv konditorn: doesn't it calcualte that for you?
09:50 jonalv I am not entirely sure you know. But I expected it to calcualte the dependencies when you select the QSAR feature
09:51 konditorn no, it just says that a "problem occurred" and from details it seems that it needs RDF (which i installed pu ti keeps on wining) an then it also seems to wining about that it needs it self to be installed...
09:52 jonalv no diea
09:52 jonalv Gpox: ?
09:56 konditorn here's the message:
09:56 konditorn Problems occurred while performing installation: Operation details
09:56 konditorn Operation details
09:56 konditorn Cannot complete the install because one or more required items could not be found.
09:56 konditorn Software being installed: QSAR Feature 2.5.0.201201091014 (net.bioclipse.qsar_feature.feature.group 2.5.0.201201091014)
09:56 konditorn Missing requirement: QSAR Feature 2.5.0.201201091014 (net.bioclipse.qsar_feature.feature.group 2.5.0.201201091014) requires 'net.bioclipse.rdf_feature.feature.group 2.5.0.qualifier' but it could not be found
10:00 Gpox I need to change qsar to not reference te .qualifer of rdf feature
10:00 konditorn oki
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10:51 CIA-137 bioclipse.qsar: Arvid Berg 2.5.x * r26ee791 / features/net.bioclipse.qsar_feature/feature.xml :
10:51 CIA-137 bioclipse.qsar: Removed .qualifier for chemoinformatics and rdf dependency
10:51 CIA-137 bioclipse.qsar: qualifier should only be used in feature/plugin version definition - http://git.io/q6P8Hw
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12:31 Gpox konditorn: you should be able to install QSAR now
12:32 konditorn oki.
12:39 zaetnick QSAR and DS install fixed now
12:40 zaetnick Gpox++
12:41 konditorn I din't even had to download a new version of Bioclipse.=)
12:44 konditorn btw, is there any one how know where I write the BSL-commands (Bioclipse Scripting Language)? I tried both the JAvaScript-console and the JMol-console...
12:46 egonw BSL is written in the JavaScript console
12:46 egonw the Jmol console eats Jmol script
12:46 egonw the Groovy console takes BSL too, but then in the Groovy syntax, not in the JavaScript syntax
12:47 konditorn mm…
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13:26 konditorn jonalv: Now when I got QSAR working I need a file called "20aa.zip", but I can't find it on the webpage that it said to be...
13:27 jonalv okey
13:34 Gpox zaetnick: http://pele.farmbio.uu.se/jenkins/job/BCRPackage/ a Bioclipse download with statistics, R, ds R integration, QSAR and RDF
13:36 zaetnick Gpox: I tried it immediately after the build was successful :)
13:36 zaetnick that's really good, Gpox++
13:48 egonw Gpox++ (great!)
13:59 CIA-137 bioclipse.statistics: Valentin Georgiev 2.5.x * rfdf24ea / (5 files in 4 dirs):
13:59 CIA-137 bioclipse.statistics: Add "Run current line" functionality to the pop-up menu
13:59 CIA-137 bioclipse.statistics: "Run selected R snippet".
13:59 CIA-137 bioclipse.statistics: If nothing is selected right-click and "Run current line/selected R snippet" executes the content of the current line.
13:59 CIA-137 bioclipse.statistics: This way one can run the code in the line without the need to select. - http://git.io/wc0cYQ
14:04 CIA-137 bioclipse.statistics: Valentin Georgiev 2.5.x * r8eb1bf4 / (3 files in 2 dirs):
14:04 CIA-137 bioclipse.statistics: Refactor - move some methods related to running code from R editor
14:04 CIA-137 bioclipse.statistics: …to net.bioclipse.r.ui.util package - http://git.io/viLabg
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