Camelia, the Perl 6 bug

IRC log for #bioclipse, 2012-04-23

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All times shown according to UTC.

Time Nick Message
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18:08 egonw olass: I created a net.bioclipse.opentox.localhost
18:08 egonw with basically just a entry in the plugin.xml for a localhost:8080 ambit install
18:09 egonw is that interesting?
18:09 egonw this way people can install OpenTox servers they want to use
18:17 olass does it contain ambit and a webserver?
18:17 egonw no, just preconfigures an entry
18:17 olass ok
18:17 egonw so that I do not have to go to prefs :)
18:17 olass haha
18:20 egonw olass: can you check if the ds.chemspider plugin has the lib/ jars ?
18:20 olass no jars there, why should they be there?
18:21 olass jars are in net.bc.chemspider
18:21 olass for axis2 I mean
18:21 egonw ah...
18:22 egonw sorry...
18:22 egonw misconfigured eclipse workspace
18:22 egonw I'm used to see only errors on selected things
18:22 egonw not the case now...
18:22 egonw so assigned those errors to the wrong plugin :(
18:29 egonw olass: yes, those plugins were missing from the DS feature
18:29 egonw did you accidentally remove those?
18:34 amarillion joined #bioclipse
18:34 egonw hi amarillion
18:35 egonw olass: and another aspect is, that this allows us to move the two default servers to be moved into separate plugins too
18:36 egonw allowing us to control servers with existing Bioclipse installations via automatic updates
18:36 egonw well, we can now too, but only by updating the full opentox stack
18:36 * egonw is thinking about net.bioclipse.opentox.ideaconsult and net.bioclipse.opentox.tumuenchen
18:37 * egonw is thinking of his hidden agenda to have more plugins than the cube of bioclipse-citing papers
18:37 amarillion hi
18:38 * egonw will go offline for a second to test his local Bioclipse-OpenTox set up for the #NBIC2012 demo
18:42 olass hi amarillion, hi egonw
18:42 olass egonw++ //for hidden agendas
18:44 egonw_ joined #bioclipse
18:45 olass wb egonw_
18:45 egonw_ mmm...
18:45 egonw_ mixed results
18:45 egonw_ local ontology/ server working
18:45 egonw_ ngn++ (for explaining me how to do that)
18:45 egonw_ but
18:45 egonw_ 20:43:23.780 ERROR [net.bioclipse.opentox.ds.OpenToxModel]   == Opentox model calculation failed for: http://localhost:8080/ambit2/model/1
18:45 egonw_ 20:43:23.781 DEBUG [net.bioclipse.opentox.ds.OpenToxModel] java.net.UnknownHostException: http
18:51 egonw_ olass: this is a BC-OT bug
18:52 egonw_ the OT prefs page uses ':' as delimeter
18:52 egonw_ making it mess up
18:52 olass did you write that prefs page or did I?
18:52 olass or more importantly, can you fix it?
18:53 egonw_ I think you did :)
18:53 * olass has a kid in his lap
18:53 egonw_ but I think I might be able to fix it...
18:53 olass would be great
18:53 egonw_ nice :)
18:56 egonw_ grpmh... it seems I was wrong... ':' is not use as delimeter in the prefs...
19:08 egonw_ olass: it's somewhere in my code
19:08 egonw_ Method: http://http//localhost:8080/ambit2/dataset
19:08 olass ok
19:08 egonw_ ok, found it too
19:09 egonw_ oh... not in my code?
19:10 egonw_ 21:08:38.351 DEBUG [net.bioclipse.opentox.ds.OpenToxModel] Invoking model: http://localhost:8080/ambit2/model/1 for service: http://http://localhost:8080/ambit2/
19:11 egonw_ arghhh..... serviceURL="http://http://localhost:8080/ambit2/"
19:11 egonw_ damn
19:11 egonw_ egonw-- (for being an idiot)
19:14 egonw it works!
19:16 egonw ok, now again but offline
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20:37 egonw I got enough for my demo tomorrow
20:37 egonw olass: thanx
20:40 olass bye egonw
20:40 olass by jonalv
20:40 olass by all

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