Camelia, the Perl 6 bug

IRC log for #bioclipse, 2012-05-25

| Channels | #bioclipse index | Today | | Search | Google Search | Plain-Text | summary

All times shown according to UTC.

Time Nick Message
00:33 JoonasD6_ joined #bioclipse
00:42 zarah joined #bioclipse
00:44 stain joined #bioclipse
00:44 CIA-46 joined #bioclipse
00:44 ChanServ joined #bioclipse
00:50 zarah joined #bioclipse
04:03 egonw joined #bioclipse
05:09 _ilbot joined #bioclipse
05:09 Topic for #bioclipse is now #bioclipse An open source workbench for chem- and bioinformatics - http://www.bioclipse.net/ | BioclipseWiki => http://wiki.bioclipse.net/ !! | logs => http://colabti.org/irclogge​r/irclogger_logs/bioclipse & http://moritz.faui2k3.org/irc​log/out.pl?channel=bioclipse
05:27 olass joined #bioclipse
06:24 konditorn joined #bioclipse
06:52 sneumann joined #bioclipse
07:02 egonw joined #bioclipse
07:08 zaetnick joined #bioclipse
07:29 jonalv joined #bioclipse
07:30 olass joined #bioclipse
07:55 * egonw is still at #harmony2012 and will hack up a manager to SBML now
08:13 egonw wondering how hard it is to make a viz-only editor using JFrame ... (I just do not remember...)
08:37 egonw joined #bioclipse
08:46 olass_ joined #bioclipse
08:47 olass_ joined #bioclipse
09:34 egonw_ joined #bioclipse
09:35 olass joined #bioclipse
10:30 egonw joined #bioclipse
10:38 egonw my Fri morning Bioclipse hack: http://chem-bla-ics.blogspot.com/2012/05/ha​rmony2012-hackathon-rapid-prototyping.html
10:38 zarah egonw's link is also http://tinyurl.com/84lr2m2
10:38 egonw Gpox++ (for moral support while doing an Eclipse editor from scratch! :)
10:57 jonalv egonw: did you make StructureDB build with Jenkins?
11:01 Gpox The problem is net.bioclipse.databases it is in core but never built on jenkins becuase it it not part of included in the net.bioclipse.core_site
11:02 jonalv Gpox: so, how to fix?
11:03 Gpox add it in the plugins tab of net.bioclipse.core_site same as with net.bioclipse.jasper is suppose
11:22 CIA-46 bioclipse.core: Arvid Berg 2.5.x * r131637e / features/net.bioclipse.core_site/feature.xml : Added net.bioclpse.databases to core_site - http://git.io/muuCGQ
11:37 egonw Gpox++
11:38 Gpox http://pele.farmbio.uu.se/jenkins/job​/bioclipse.structuredb/8/consoleFull
11:38 zarah Gpox's link is also http://tinyurl.com/bwswoup
11:39 Gpox jonalv: search for Error, there is errors in the plugin.xml
11:39 egonw at the very end
11:40 egonw e.g. "Error: file /home/hudson/jobs/bioclipse.structuredb/workspac​e/plugins/net.bioclipse.structuredb/plugin.xml, line 6: Attribute 'secret' of element 'property' must be defined."
12:12 jonalv ah okey
12:48 egonw argh... cannot figure out how to throw selection events...
12:48 egonw should be as simple as implementing ISelectionProvider
12:48 egonw but not clue anymore how to deal with ISelection...
12:48 egonw when to create, what and how...
12:48 egonw google is not helpful
12:48 zarah egonw: http://thisisnothelpful.tumblr.com/
12:51 egonw zarah: ?
12:51 zarah egonw: yes?
12:51 egonw zarah: you're talking gibberish
12:51 zarah egonw: excuse me?
12:51 egonw yes, you are
12:51 jonalv google gibberish
12:51 zarah jonalv: http://en.wikipedia.org/wiki/Gibberish
12:54 egonw jonalv: procrastinating?
12:54 jonalv egonw: lol
12:59 Gpox egonw: if you got a JFace viewer it implements ISelectionProvider
13:03 egonw SBMLEditor extends EditorPart
13:06 Gpox ah yeah you uses JFrame. This might help http://random-eclipse-tips.blogspot.se​/2009/02/eclipse-how-to-implement.html
13:06 zarah Gpox's link is also http://tinyurl.com/bv4k4hv
13:06 egonw it seems jsmbl does not necessarily require AWT...
13:06 egonw their data model implements the JTree source...
13:07 egonw if only I could use that in a SWT tree...
13:07 Gpox you should be able to write an adapter
13:07 egonw if only I had the right example :)
13:07 egonw but that link you just gave seems useful!
13:09 Gpox wait the datamodel implements JTree?
13:10 Gpox or is it passed via the constructor or setModel
13:10 egonw passed via constructor
13:10 egonw sloppy formulation by me
13:11 Gpox then you should be able to adapt that to a contentprovider
13:13 Gpox ITreeContentProvider should map ok
13:15 egonw example code?
13:21 JoonasD6_ Anyone caught my question a day back?
13:21 egonw I didn't
13:22 JoonasD6 If there're any knowledge on Bioclipse having problems on Windows Server platforms. I try to launch it but the process just shows up for a second or two in the task manager and then closes down without any message
13:23 JoonasD6 May it's a Java problem or something...
13:24 Gpox egonw: no, implement ITreeContentProvider and pass in a TreeModel the methods are mostly the same some inverted like hasChilder = !isLeaf and getElements is getRoot as the TreeViewer can have multiple roots
13:31 egonw I'm giving up...
13:31 egonw the problem should not be too hard, but my brain refuses to complete the task :/
13:31 Gpox it could be http://wiki.eclipse.org/Eclipse.ini describes hwo to set the vm it should work the same fro Bioclispe
13:33 Gpox egonw: open http://docs.oracle.com/javase/1.4.2/do​cs/api/javax/swing/tree/TreeModel.html and http://help.eclipse.org/indigo/index.jsp​?topic=%2Forg.eclipse.platform.doc.isv%2​Freference%2Fapi%2Forg%2Feclipse%2Fjface​%2Fviewers%2FITreeContentProvider.html beside each other. TreeModelAdapter(TreeModel model) implements ITreeContentProvider
13:33 zarah Gpox's link is also http://tinyurl.com/d7j88uy
13:36 egonw ah...
13:36 egonw I had a stacktrace...
13:36 egonw and now have something
13:36 egonw stacktrace++
13:49 egonw mmm
13:49 egonw invalid thread access
14:25 egonw_ joined #bioclipse
15:10 egonw__ joined #bioclipse
15:12 sneumann joined #bioclipse
15:18 sneumann joined #bioclipse
15:24 konditorn left #bioclipse
16:54 egonw__ joined #bioclipse
18:25 egonw__ joined #bioclipse
19:16 sneumann joined #bioclipse
20:17 zaetnick joined #bioclipse
20:47 jonalv joined #bioclipse
21:47 zaetnick joined #bioclipse

| Channels | #bioclipse index | Today | | Search | Google Search | Plain-Text | summary