Camelia, the Perl 6 bug

IRC log for #bioclipse, 2012-06-07

| Channels | #bioclipse index | Today | | Search | Google Search | Plain-Text | summary

All times shown according to UTC.

Time Nick Message
03:54 egonw joined #bioclipse
06:35 konditorn joined #bioclipse
06:36 konditorn left #bioclipse
06:36 sneumann joined #bioclipse
06:36 konditorn joined #bioclipse
06:59 egonw joined #bioclipse
07:00 Gpox joined #bioclipse
07:16 egonw Gpox: how do you turn on OSGi logging in BIoclipse?
07:16 egonw (and, moin moin :)
07:18 Gpox I don't know about OSGi logging but you hav to remove the line with org.apache.log4j from bundles.info to get it to work right now
07:18 egonw ok
07:18 Gpox for the logback that is
07:19 egonw so, it is complicated :)
07:26 jonalv joined #bioclipse
07:26 Gpox it depends who you are
07:26 Gpox sed -i '/^org\.apache\.log4j,.*/ d' configuration/org.eclipse.equinox​.simpleconfigurator/bundles.info
07:26 Gpox should do it
07:57 egonw who you are and how often you have to fix such things :)
08:11 zaetnick joined #bioclipse
08:16 amarillion joined #bioclipse
09:33 CIA-100 bioclipse.cheminformatics: Jonathan Alvarsson 2.5.x * r77b3d57 / (2 files in 2 dirs): Merge pull request #5 from valyo/2.5.x (+7 more commits...) - http://git.io/XH9J3w
09:40 CIA-100 bioclipse.cheminformatics: Jonathan Alvarsson 2.5.x * r374217f / plugins/net.bioclipse.cdk.jchempaint/src/net/bioc​lipse/cdk/jchempaint/editor/JChemPaintEditor.java : spelling - http://git.io/IQzZkw
11:28 konditorn Gpox: ping
11:28 Gpox konditorn: pong
11:28 konditorn In JChemPaintEditorWidget.updateAtomTypesAndHCounts( IChemModel ) (row
11:28 konditorn 810-842) are the flag "CDKConstants.ISAROMATIC" set to false for all
11:28 konditorn atoms and all bonds. Is there any reason for this?
11:32 Gpox that code was commited 2009 by egonw. CDK bug #2815727 the properties was confusing the CDKAtomTyper
11:32 zarah bug #2815727 | http://pele.farmbio.uu.se/bugz​illa36/show_bug.cgi?id=2815727
11:32 Gpox no zarah that is wrong
11:34 egonw :)
11:34 egonw konditorn: that setting was needed as workaround...
11:34 egonw the placement of double bonds should make that obsolete
11:36 konditorn oki, 'cos if I remove either the one on the atoms or the one for the bonds the aromatics is preserved (I haven't tried what happens if both are removed)…
11:47 konditorn oki, that is the reason why the aromatics disappear when I create a molecule from a smile: that flag is the only thing that indicate that it is aromatic.
11:50 egonw indeed
12:02 samuell joined #bioclipse
12:03 konditorn egonw: does Kevin use the SINGLE_OR_DOUBLE-flag in his patch?
12:04 egonw no, don't think so
12:31 CIA-100 bioclipse.structuredb: jonalv master * r2d7c6bd / plugins/net.bioclipse.structuredb/plugin.xml : added secret property value - http://git.io/-W149A
12:36 egonw sounds interesting...
12:36 egonw what's that commit about?
12:37 jonalv egonw: secret :)
12:38 jonalv egonw: nah it defines whther the Usermangaer field is hidden as passwords should be, or not *as all other proprties should be)
12:38 egonw ic
14:42 samuell olas: E din mailbox full?
14:42 * samuell realizes he speaks swedish in an english channel ...
14:44 stain olas da, bruker du ikke gmail?? :)
14:54 konditorn joined #bioclipse
16:52 sneumann joined #bioclipse
18:30 egonw joined #bioclipse
18:39 Gpox joined #bioclipse
18:52 amarillion joined #bioclipse
19:56 Gpox joined #bioclipse
20:37 zaetnick joined #bioclipse
21:03 Gpox joined #bioclipse

| Channels | #bioclipse index | Today | | Search | Google Search | Plain-Text | summary