Camelia, the Perl 6 bug

IRC log for #bioclipse, 2012-09-13

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All times shown according to UTC.

Time Nick Message
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06:39 Pyryhyry ahh, ok. i saw the method of "export R_HOME=/usr/lib/R" on this blog post:
06:39 Pyryhyry http://chem-bla-ics.blogspot.fi/2011/02/​diy-running-r-from-within-bioclipse.html
06:39 zarah Pyryhyry's link is also http://tinyurl.com/8rzget9
06:40 Pyryhyry perhaps it only works if you set the R_HOME variable before installing the R-bioclipse extension?
06:53 zaetnick Pyryhyry: problems with Bioclipse-R?
06:54 Pyryhyry not anymore
06:55 zaetnick ok
06:56 Pyryhyry i was just wondering aloud about the blog post i linked, since in that example a mention was made only to set the R_HOME environmental variable in the system, and it seemed to work
06:57 egonw joined #bioclipse
06:58 Pyryhyry although i hear that the autodetection does not usually work (we discussed about this last night)
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07:22 zaetnick yes, the auto detection doesn't do much… but what OS are you running
07:22 zaetnick LInux?
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07:27 Pyryhyry yeah, linux mint 12 (similar to ubuntu 11.10). egonw suggested setting the R_HOME in bioclipse Preferences, and that solved the problem
07:27 egonw zaetnick: we should add that pointer to the Bioclipse-R front page, I guess
07:29 zaetnick egonw: do you mean here http://bioclipse.net/bioclipse-r
07:30 egonw right
07:32 zaetnick yea, I'll edit this one, and start a wiki page for those kind of things, Bug 3300
07:32 zarah bug #3300 | http://pele.farmbio.uu.se/bug​zilla36/show_bug.cgi?id=3300
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11:42 CIA-110 bioclipse.cheminformatics: Arvid Berg 2.5.x * rc5de6ce / plugins/net.bioclipse.cdk.ui/src/net/biocli​pse/cdk/ui/handlers/ConvertSMILEStoSDF.java : fffsdff - http://git.io/J-XGpw
11:42 CIA-110 bioclipse.cheminformatics: Arvid Berg 2.5.x * r29a5289 / plugins/net.bioclipse.cdk.ui/src/net/biocli​pse/cdk/ui/handlers/ConvertSMILEStoSDF.java : Do atomtyping when converting from SMILES to SDF - http://git.io/RszF0g
11:42 CIA-110 bioclipse.cheminformatics: Arvid Berg 2.5.x * rad55edf / plugins/net.bioclipse.cdk.ui/plugin.xml : Changed name of convert SMILES to SDF to be less verbose - http://git.io/6b8F1A
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