Camelia, the Perl 6 bug

IRC log for #bioclipse, 2013-08-01

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All times shown according to UTC.

Time Nick Message
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08:58 konditorn egonw__: Hi, I have a problem with using MyExperiment in BC. It seams that MyExperiments SQL-server is down, and I wonder if you can confirm this?
08:58 egonw hi konditorn
08:59 egonw one sec
08:59 egonw let me test...
08:59 egonw I had not tried pulling in the script from myexp yet
08:59 egonw did not think about that after blogging...
08:59 egonw but then it was bed time
08:59 konditorn =)
09:01 egonw mmm... I cannot get to install the Social feature
09:01 konditorn mm….
09:02 egonw https://gist.github.com/egonw/6129722
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10:00 egonw konditorn: sorry, had to do some shopping...
10:00 egonw now trying to install the social feature via the "New Feature"
10:14 egonw that works...
10:15 egonw maybe this is the wrong update site? 5010994484675
10:15 egonw http://pele.farmbio.uu.se/bioclipse/releases/2.6
10:15 egonw ?
10:16 egonw myexperiment.downloadWorkflow(3675) is broken for me too
10:16 egonw will explore...
10:48 egonw this will take a while...
10:48 egonw don't have a BC2.6 dev environment on my new laptop it seems... :/
10:50 konditorn oki, it might be that MyExperiments SQL-server is down… The examples on there rdf-introdaction don't run.
10:52 konditorn *their
11:35 egonw what was it again with the target platform to have it properly find the r.walware_feature?
11:35 egonw the target platform doesn't resolve right now
11:37 egonw @tell jonalv have you played with http://ctr.wikia.com/ yet? how many problems can be solved in JavaScript with a stock Bioclipse?
11:38 egonw ugh... no zarah?
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12:14 egonw jonalv: have you played with http://ctr.wikia.com/ yet? how many problems can be solved in JavaScript with a stock Bioclipse?
12:15 egonw and...
12:15 egonw have you played with http://ctr.wikia.com/ yet? how many problems can be solved in JavaScript with a stock Bioclipse?
12:15 egonw ugh
12:15 egonw [08/01/13 13:35] <egonw> what was it again with the target platform to have it properly find the r.walware_feature?
12:15 jonalv egonw: nope I don't know what that is :)
12:15 egonw Chemistry Toolkit Rosetta
12:15 jonalv that target platform thing sounds like a problem for Gpox
12:16 jonalv Gpox: you there?
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12:17 Gpox egonw: target platform resolves for me with latest from develop
12:18 jonalv egonw: I would hope quite a few of those problems could be solved with Bioclipse but I donut know
12:19 jonalv Maybe I should have a look at it some day...
12:19 egonw Gpox: ok, I'll keep trying :)
12:19 jonalv after all, we need use cases :)
12:19 egonw jonalv: yeah, that's what my first response with the CDK was too... only one way to find out :)
12:19 egonw indeed, and these CTR ones are quite relevant
12:20 egonw BTW, they're from Andrew Dalke
12:20 jonalv Maybe someone else want's to help out as well?
12:20 Gpox Walware-RJ version 2.1.0.201305201138
12:21 Gpox egonw: you running with juno or kepler?
12:21 egonw kepler
12:21 egonw it's resetting itself now...
12:21 Gpox I haven't tried it with bioclipse yet
12:21 egonw OK, if I don't get it to work with 4.3 I will try 4.2...
12:22 egonw I think I had this problem last year as well, but can't remember what fixed it at the time... :/
12:25 egonw Gpox: OK, it works now
12:25 egonw not sure what changed...
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13:02 Topic for #bioclipse is now #bioclipse An open source workbench for chem- and bioinformatics - http://www.bioclipse.net/ | BioclipseWiki => http://wiki.bioclipse.net/ !! | logs => http://colabti.org/irclogge​r/irclogger_logs/bioclipse & http://moritz.faui2k3.org/irc​log/out.pl?channel=bioclipse
13:05 zarah joined #bioclipse
13:06 egonw hi zarah!
13:08 konditorn zarah: hi!
13:08 zarah hello konditorn :)
13:09 egonw zarah: you suck up
13:09 zarah egonw: that was not so easy for a little bot to understand
13:09 egonw commitbot++
13:10 egonw konditorn: OK, finally booting Bioclipse from Eclipse 4.3 :)
13:10 konditorn =)
13:11 egonw oh...
13:12 egonw http://rdf.myexperiment.org/sparql
13:12 egonw it seems nothing really wrong with out code :)
13:12 egonw or at least that I can detect
13:12 egonw their SPARQL end point is down :(
13:13 konditorn oki, maybe I should file a bug to them then…
13:14 egonw please do
13:14 egonw a post to bioclipse-user@ to inform our users may also be a good idea
13:15 konditorn oki.
13:16 konditorn thanks for the help egonw =)
13:16 egonw yeah, sorry it took so long to give an answer :)
13:17 egonw OK, back to some CDK hacking now then...
13:21 egonw BTW, did someone recently try to open the ChEMBL SD file in Bioclipse?
13:21 egonw Does that still work?
13:24 konditorn is it any different from an ordinary SD-file…?
13:24 egonw no, not really...
13:24 egonw just large
13:24 egonw Gpox's used to open 2GB files...
13:24 egonw does it still do that properly?
13:24 konditorn oki
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