Camelia, the Perl 6 bug

IRC log for #bioclipse, 2013-09-12

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All times shown according to UTC.

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09:05 commitbot [bioclipse.core01] goglepox pushed 1 new commit to 2.6.1: http://git.io/CnsqVA
09:05 commitbot bioclipse.core/2.6.1 3414202 Arvid Berg: Installing from 'Install Feature' installs the latest from all enabled p2 sites
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09:08 commitbot [bioclipse.cheminformatics01] goglepox pushed 1 new commit to 2.6.1: http://git.io/NK0nHg
09:08 commitbot bioclipse.cheminformatics/2.6.1 52a0f36 Arvid Berg: Fix editor for 3d-sdfiles...
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09:10 commitbot [bioclipse.balloon01] goglepox pushed 1 new commit to 2.6.1: http://git.io/iJc91w
09:10 commitbot bioclipse.balloon/2.6.1 dc058e5 Arvid Berg: Make a synced refresh of workspace before reading generated file...
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09:11 commitbot [bioclipse.smartcyp01] goglepox created 2.6.1 (+2 new commits): http://git.io/wcUBiA
09:11 commitbot bioclipse.smartcyp/2.6.1 3fd74c4 Arvid Berg: Add releng project
09:11 commitbot bioclipse.smartcyp/2.6.1 a691ca3 Arvid Berg: Adds more logging to SmartcypModel
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12:09 samuell \o
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12:46 commitbot [bioclipse.cheminformatics01] goglepox pushed 1 new commit to 2.6.1: http://git.io/5iGtzg
12:46 commitbot bioclipse.cheminformatics/2.6.1 296bfe3 Arvid Berg: Update message for bond order 4...
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14:00 commitbot [bioclipse.core01] goglepox pushed 1 new commit to 2.6.1: http://git.io/t0HPqA
14:00 commitbot bioclipse.core/2.6.1 4b58b3c Arvid Berg: Add ds-model site to available sites
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15:54 commitbot [bioclipse.hpc01] samuell pushed 3 new commits to develop: http://git.io/mlRcQg
15:54 commitbot bioclipse.hpc/develop 4d3a23b Samuel Lampa: Trying to create a build script according to Gpox advice
15:54 commitbot bioclipse.hpc/develop 74df3d1 Samuel Lampa: Include images in exported artifacts
15:54 commitbot bioclipse.hpc/develop e384ca1 Samuel Lampa: Unset specific verison qualifier
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16:57 commitbot [bioclipse.hpc01] samuell pushed 1 new commit to develop: http://git.io/a4qOYQ
16:57 commitbot bioclipse.hpc/develop f07d964 Samuel Lampa: Better error message when CmdSubSystem is not found
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17:10 commitbot [bioclipse.hpc01] samuell pushed 1 new commit to develop: http://git.io/oUZsxA
17:10 commitbot bioclipse.hpc/develop 82a9e27 Samuel Lampa: Trying to add more RSE packages as requirement, to hopefully inlude CmdSubSystem
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17:15 commitbot [bioclipse.hpc01] samuell pushed 1 new commit to develop: http://git.io/590dmg
17:15 commitbot bioclipse.hpc/develop 676d903 Samuel Lampa: Adding Jsch lib to dependencies (of plugin and feature)
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17:25 samuell Don't understand why RemoteCommandHelpers.getCmdSubSystem(host) returns null in my exsternally built eclipse version, but not when I start it from within Eclipse ...
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17:54 commitbot [bioclipse.hpc01] samuell pushed 2 new commits to develop: http://git.io/sqQYAg
17:54 commitbot bioclipse.hpc/develop f34c2fa Samuel Lampa: Fixing a typo in the build script
17:54 commitbot bioclipse.hpc/develop f403b26 Samuel Lampa: Added required bioclipse feature
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18:00 commitbot [bioclipse.hpc01] samuell pushed 1 new commit to develop: http://git.io/-CwNyw
18:00 commitbot bioclipse.hpc/develop 03b1dbf Samuel Lampa: Adding a still missing dependency: org.eclipse.rse
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18:06 * samuell might have been spending the day trying to build his product using the wrong eclipse installation
18:21 samuell Nope ... totally the same problem when building with the "correct" version ...
18:22 egonw sorry to hear that
18:22 egonw yeah, building products is not trivial...
18:40 samuell egonw, Yeah, and if I could at least run my exported product through the debugger ...
18:41 samuell Ah, someone says it is possible ... http://stackoverflow.com/questions/12799423/is​-possible-to-debug-eclipse-rcp-product-and-how
18:41 zarah samuell's link is also http://tinyurl.com/nun6s9y
18:41 samuell Gotta try that
18:42 egonw :)
18:43 samuell Classic thing of thinking productively only when you "speak" :)
18:49 samuell Cool, debugging works ...
18:53 samuell Hmm, my connection is a FileServiceSubSystem, instead of the expected IRemoteCmdSubSystem ...
18:53 samuell ... thus is not returned, and null is returned instead.
18:55 * egonw is testing his new OpenTox code...
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19:15 commitbot [bioclipse.hpc01] samuell pushed 1 new commit to develop: http://git.io/WN-xCg
19:15 commitbot bioclipse.hpc/develop 71906f5 Samuel Lampa: Trying to add even more command subsystem related dependencies to plugin and feature
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20:49 egonw hi olass
20:49 olass hi egonw
20:50 olass egonw: maiking more progress?
20:50 egonw yeah, I think my work is almost done :)
20:50 olass nice!
20:50 egonw except the writing, that is
20:50 olass I have made some too
20:50 olass but major refactoring required of DS
20:50 olass so will have deep affects
20:51 olass but it's for the good
20:51 egonw mmm...
20:51 egonw yeah, it likely is...
20:51 olass struggling with it now
20:51 egonw it can later be used for many things
20:51 olass yes
20:51 olass it was really designed for molecules
20:51 egonw it can later be used for many domain objects
20:51 olass right
20:51 olass so it's for the good
20:52 egonw yeah, looking forward to your code...
20:52 egonw at the manager and server side, we're good to go
20:53 egonw running the demo model from BSL works
20:53 egonw now doing the BSL methods for calculating a single descriptor on a NM
20:55 egonw > opentoxnm.calculateDescriptor("http://apps.ideaconsult.net:8080/bioclipse/", "http://apps.ideaconsult.net:8080/bioclipse/al​gorithm/ConductionBandEnergyPredictedToxicity", list)
20:55 egonw [Unknown, Unknown, Unknown, Unknown, Unknown, YES, YES, NO, Unknown, Unknown, Unknown]
20:56 egonw it's great than one can just almost copy code :)
20:56 egonw long live open standards :)
20:57 egonw (the unknowns are because the descriptor class does not have info on all compounds)
21:00 olass can you paste here the gists again?
21:01 olass hmm, and can you make a local model to predict something on an IMaterial?
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