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| 10:08 |
sneumann |
so, ready when you are |
| 10:08 |
sneumann |
argh, wrong window :-) |
| 10:25 |
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| 10:54 |
egonw_ |
Gpox: can Bioclipse copy/paste entries from one SD file to another? |
| 10:57 |
egonw_ |
I have a question here from someone from the Dutch bioinfo scene that has SD files, wants to select and extract a few from each, and to put it in a new SD file |
| 11:47 |
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| 11:53 |
egonw |
olass: |
| 11:53 |
egonw |
[03/21/14 11:54] <egonw_> Gpox: can Bioclipse copy/paste entries from one SD file to another? |
| 11:53 |
egonw |
[03/21/14 11:57] <egonw_> I have a question here from someone from the Dutch bioinfo scene that has SD files, wants to select and extract a few from each, and to put it in a new SD file |
| 11:53 |
egonw |
is there a tutorial for editing/creating SD files? |
| 11:54 |
olass |
egonw: I think the support is limited… |
| 11:54 |
olass |
egonw: you can extract entries from SDF and I saw a demo for drag and drop, but not certain that is stable |
| 11:54 |
egonw |
:( because the viewing works really well :) |
| 11:55 |
olass |
:) |
| 11:55 |
olass |
in any way I do not know if there is a doc |
| 11:55 |
olass |
Gpox: do you know? |
| 12:01 |
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| 12:07 |
Gpox |
draging one at the time seams to work, selection don't work so well in sd-files. I don't beleve there is a doc somewhere |
| 12:08 |
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| 12:08 |
egonw |
ok, dragging... |
| 12:08 |
egonw |
trying that now... |
| 12:08 |
egonw |
creating a new SD file threw an exception for me... |
| 12:09 |
egonw |
but it also seems I can only create a new SD file with some prior input ... |
| 12:09 |
egonw |
it would be nice to be able to create an empty SD file... |
| 12:09 |
egonw |
or maybe that's just not in my checkout version |
| 12:09 |
Gpox |
I could create a empty file named .sdf and drop molecules in it |
| 12:10 |
egonw |
oh, exception -> never mind! is because my git config details are out of date |
| 12:11 |
egonw |
how did you create the empty SD file? |
| 12:11 |
egonw |
because I only find the one that insists on some input |
| 12:11 |
egonw |
(via wizard pages) |
| 12:11 |
Gpox |
new->Generar->file |
| 12:11 |
Gpox |
with the endiing .sdf |
| 12:12 |
egonw |
ah, so by-passing special new SD creation wizards... |
| 12:12 |
egonw |
sure, that should work |
| 12:14 |
egonw |
I only seem to be able to DnD one structure, the frist... |
| 12:14 |
egonw |
the next ones don't get added... |
| 12:16 |
Gpox |
you need to click the one to drag, the selection is kinda wonky |
| 12:17 |
egonw |
ah, got it! |
| 12:17 |
egonw |
oh, well, that's not bad at all! |
| 12:18 |
egonw |
it can do with improvements, but it's functional |
| 12:18 |
egonw |
merging properties is another thing... |
| 12:19 |
egonw |
when you copy from two files, the first props were picked up (though only shown when saved), the second props don't show up after saving... |
| 12:19 |
egonw |
Gpox: but realize that the guy for whom this may be a solution is now doing it manually... |
| 12:19 |
egonw |
so, it may very well be an improvement already |
| 12:21 |
Gpox |
there is also drag to the navigator to create cml files |
| 12:22 |
egonw |
oh, also interesting! |
| 12:22 |
egonw |
oh, I just realize another Q... |
| 12:22 |
egonw |
does reaction editing still work in Bioclipse... |
| 12:22 |
Gpox |
have it ever? |
| 12:22 |
egonw |
it looks not... |
| 12:23 |
egonw |
yeah, maybe not... |
| 12:24 |
egonw |
Gpox++ (for his support on the spot) |
| 12:59 |
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