Perl 6 - the future is here, just unevenly distributed

IRC log for #bioclipse, 2014-03-21

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All times shown according to UTC.

Time Nick Message
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10:08 sneumann so, ready when you are
10:08 sneumann argh, wrong window :-)
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10:54 egonw_ Gpox: can Bioclipse copy/paste entries from one SD file to another?
10:57 egonw_ I have a question here from someone from the Dutch bioinfo scene that has SD files, wants to select and extract a few from each, and to put it in a new SD file
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11:53 egonw olass:
11:53 egonw [03/21/14 11:54] <egonw_> Gpox: can Bioclipse copy/paste entries from one SD file to another?
11:53 egonw [03/21/14 11:57] <egonw_> I have a question here from someone from the Dutch bioinfo scene that has SD files, wants to select and extract a few from each, and to put it in a new SD file
11:53 egonw is there a tutorial for editing/creating SD files?
11:54 olass egonw: I think the support is limited…
11:54 olass egonw: you can extract entries from SDF and I saw a demo for drag and drop, but not certain that is stable
11:54 egonw :( because the viewing works really well :)
11:55 olass :)
11:55 olass in any way I do not know if there is a doc
11:55 olass Gpox: do you know?
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12:07 Gpox draging one at the time seams to work, selection don't work so well in sd-files. I don't beleve there is a doc somewhere
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12:08 egonw ok, dragging...
12:08 egonw trying that now...
12:08 egonw creating a new SD file threw an exception for me...
12:09 egonw but it also seems I can only create a new SD file with some prior input ...
12:09 egonw it would be nice to be able to create an empty SD file...
12:09 egonw or maybe that's just not in my checkout version
12:09 Gpox I could create a empty file named .sdf and drop molecules in it
12:10 egonw oh, exception -> never mind! is because my git config details are out of date
12:11 egonw how did you create the empty SD file?
12:11 egonw because I only find the one that insists on some input
12:11 egonw (via wizard pages)
12:11 Gpox new->Generar->file
12:11 Gpox with the endiing .sdf
12:12 egonw ah, so by-passing special new SD creation wizards...
12:12 egonw sure, that should work
12:14 egonw I only seem to be able to DnD one structure, the frist...
12:14 egonw the next ones don't get added...
12:16 Gpox you need to click the one to drag, the selection is kinda wonky
12:17 egonw ah, got it!
12:17 egonw oh, well, that's not bad at all!
12:18 egonw it can do with improvements, but it's functional
12:18 egonw merging properties is another thing...
12:19 egonw when you copy from two files, the first props were picked up (though only shown when saved), the second props don't show up after saving...
12:19 egonw Gpox: but realize that the guy for whom this may be a solution is now doing it manually...
12:19 egonw so, it may very well be an improvement already
12:21 Gpox there is also drag to the navigator to create cml files
12:22 egonw oh, also interesting!
12:22 egonw oh, I just realize another Q...
12:22 egonw does reaction editing still work in Bioclipse...
12:22 Gpox have it ever?
12:22 egonw it looks not...
12:23 egonw yeah, maybe not...
12:24 egonw Gpox++ (for his support on the spot)
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