Perl 6 - the future is here, just unevenly distributed

IRC log for #bioclipse, 2014-08-19

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All times shown according to UTC.

Time Nick Message
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01:47 Topic for #bioclipse is now #bioclipse An open source workbench for chem- and bioinformatics - http://www.bioclipse.net/ | BioclipseWiki => http://wiki.bioclipse.net/ !! | logs => http://colabti.org/irclogger/irclogger_logs/bioclipse & http://moritz.faui2k3.org/irclog/out.pl?channel=bioclipse
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12:15 mkad Hi
12:15 zarah saluton mkad
12:15 mkad anyone using biojava ?
12:15 mkad I know this is not right place, but #biojava is empty
12:16 mkad i tried to run MSA for 7 sequences it takes forever.. a bug ?
12:16 mkad do you guys have any suggestions for a functional mature library to work with biological sequences for java ?
12:35 egonw I am not actively using it...
12:36 egonw you can ask on their mailing list? http://biojava.org/wiki/BioJava:MailingLists
12:36 mkad I guess I would just implement something running external program than wait for reply on mailinglist
12:37 mkad but thanks
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13:04 mkad egonw, seems like Java is really not a language to use for sequence analysis, I can't even find a decent library to read newick files, and if any it does not work... seems like people are still in their 80's when it comes to developing tools that work with biological sequences.. .:(
13:05 egonw yeah, I think for sequencing Python is more popular...
13:42 mkad yeah python seems like more sane choice than perl, but still far away from what is needed for my task.. :( really looks like I have no choice than to code in language I always was against so much
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