Camelia, the Perl 6 bug

IRC log for #bioperl, 2009-04-17

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All times shown according to UTC.

Time Nick Message
01:06 philsf joined #bioperl
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09:27 deafferret Searching for a framework that challenges and scores different sequence assemblers. Wondering if I should start writing one.
10:20 kd` joined #bioperl
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21:44 pyrimidine joined #bioperl
21:45 pyrimidine deafferret: (checked backlog and saw your comment) Bio::Assembly needs some helping hands, might be worth plumbing that code prior to writing up your own stuff.
21:46 deafferret pyrimidine: roger that. I'll check it out thoroughly before I go too crazy on my own tangents  :)
21:47 deafferret not familiar with what that namespace does already
21:47 pyrimidine basic classes for contigs, scaffolds, etc
21:47 pyrimidine including IO
21:47 pyrimidine though it needs some refactoring
21:47 deafferret ah. that could be very helpful as I harness each assembler...
21:47 * deafferret is full of pipedreams today
21:48 pyrimidine it has a lot of useful stuff, just needs to be reworked to handle a common SeqFeature database (one per assembly instead of one per scaffold)
21:52 deafferret very cool. thanks for that. going to commute before it gets too cold for motorcycle  :)
21:56 * pyrimidine remembering Bio::Assembly is also part of the Align overhaul (http://www.bioperl.org/wiki/Align_Refactor)
21:58 deafferret roger that. thanks.
21:59 * pyrimidine biking home.  Buh-bye!
22:00 pyrimidine left #bioperl
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